RNA–Protein interactions for RNA: ENST00000473099.1

VPS13D-205, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 461 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-205ENST00000473099 CAPZA3Q96KX2 299 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 RTP3Q9BQQ7 232 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 B3GNT5Q9BYG0 378 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 PNPLA8Q9NP80 782 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 METTL5Q9NRN9 209 aaKnown RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 KRT82Q9NSB4 513 aa13.5□□□□□ -0.25
VPS13D-205ENST00000473099 CHORDC1Q9UHD1 332 aaPredicted RBP13.5□□□□□ -0.25
VPS13D-205ENST00000473099 MYBPHLA2RUH7 354 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 PGRMC1O00264 195 aaKnown RBP13.49□□□□□ -0.25
VPS13D-205ENST00000473099 DYNC1I1O14576 645 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 ZNF185O15231 689 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 AP1G2O75843 785 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 UPP2O95045 317 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 GLI1P08151 1106 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 FGFR3P22607 806 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 TKTP29401 623 aaKnown RBP13.49□□□□□ -0.25
VPS13D-205ENST00000473099 CXCR5P32302 372 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 CETN2P41208 172 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 GATMP50440 423 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 BCAR1P56945 870 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 RWDD2BP57060 319 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 WDR5P61964 334 aaKnown RBP13.49□□□□□ -0.25
VPS13D-205ENST00000473099 RPL7AP62424 266 aaKnown RBP13.49□□□□□ -0.25
VPS13D-205ENST00000473099 PPP2R5EQ16537 467 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 EFHC1Q5JVL4 640 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 KIAA0319Q5VV43 1072 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 CCDC70Q6NSX1 233 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 LLGL2Q6P1M3 1020 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 FUT10Q6P4F1 479 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 CLEC20AQ6ZU45 233 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 FAM183BPQ6ZVS7 135 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 SLC26A9Q7LBE3 791 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 PHLDB2Q86SQ0 1253 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 PIGZQ86VD9 579 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 MYLPFQ96A32 169 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 ZNF689Q96CS4 500 aaPredicted RBP13.49□□□□□ -0.25
VPS13D-205ENST00000473099 FUBP3Q96I24 572 aaKnown RBP eCLIP13.49□□□□□ -0.25
VPS13D-205ENST00000473099 BTBD6Q96KE9 485 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 PSMB7Q99436 277 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 PKMYT1Q99640 499 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 LRRC4Q9HBW1 653 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 CSNK1G1Q9HCP0 422 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 ASNSD1Q9NWL6 643 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 MARCH5Q9NX47 278 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 STK39Q9UEW8 545 aa13.49□□□□□ -0.25
VPS13D-205ENST00000473099 DPYSL4O14531 572 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 CEP104O60308 925 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 RNF8O76064 485 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 LAG3P18627 525 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 GPD1P21695 349 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 PSMA2P25787 234 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 ITGB8P26012 769 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 RFC1P35251 1148 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 RGS7P49802 495 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 PEX5P50542 639 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 DNA2P51530 1060 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 ZNF143P52747 638 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 FPGSQ05932 587 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 MRPL58Q14197 206 aaKnown RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 HADHQ16836 314 aaKnown RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 VARS2Q5ST30 1063 aaKnown RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 FAM171A1Q5VUB5 890 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 PSRC1Q6PGN9 363 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 OLFML1Q6UWY5 402 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 PAQR9Q6ZVX9 377 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 ANKS3Q6ZW76 656 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 RSRC2Q7L4I2 434 aaKnown RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 POLNQ7Z5Q5 900 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 SPATA2LQ8IUW3 424 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 SIX6OS1Q8N1H7 587 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 MAIP1Q8WWC4 291 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 LPIN3Q9BQK8 851 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 BUD13Q9BRD0 619 aaKnown RBP eCLIP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 CNPY3Q9BT09 278 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 HTATIP2Q9BUP3 242 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 ZCWPW1Q9H0M4 648 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 DMAP1Q9NPF5 467 aaPredicted RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 DDX56Q9NY93 547 aaKnown RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 TJP2Q9UDY2 1190 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 TMEM59LQ9UK28 342 aa13.48□□□□□ -0.25
VPS13D-205ENST00000473099 MTCL1Q9Y4B5 1905 aaKnown RBP13.48□□□□□ -0.25
VPS13D-205ENST00000473099 C2CD4BA6NLJ0 364 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 CCDC188H7C350 402 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 TULP2O00295 520 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 CLDN5O00501 218 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 PAPSS1O43252 624 aaPredicted RBP13.47□□□□□ -0.25
VPS13D-205ENST00000473099 FGBP02675 491 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 TUBBP07437 444 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 KRT7P08729 469 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 CTXN3Q4LDR2 81 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 CC2D1AQ6P1N0 951 aaPredicted RBP13.47□□□□□ -0.25
VPS13D-205ENST00000473099 VSTM1Q6UX27 236 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 KATNAL2Q8IYT4 538 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 SCML4Q8N228 414 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 OR10T2Q8NGX3 314 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 C2orf15Q8WU43 125 aaKnown RBP13.47□□□□□ -0.25
VPS13D-205ENST00000473099 RBM41Q96IZ5 413 aaKnown RBP13.47□□□□□ -0.25
VPS13D-205ENST00000473099 RNPC3Q96LT9 517 aaKnown RBP13.47□□□□□ -0.25
VPS13D-205ENST00000473099 ZNF558Q96NG5 402 aa13.47□□□□□ -0.25
VPS13D-205ENST00000473099 TRIM62Q9BVG3 475 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms