RNA–Protein interactions for RNA: ENST00000469207.5

HDAC3-204, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 829 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-204ENST00000469207 EMC10Q5UCC4 262 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 DENND5BQ6ZUT9 1274 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 DPH6Q7L8W6 267 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 HS2ST1Q7LGA3 356 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 TRAPPC11Q7Z392 1133 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 ADGRG2Q8IZP9 1017 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 FRMD1Q8N878 549 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 FSIP1Q8NA03 581 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 ZNF516Q92618 1163 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 ATP2A3Q93084 1043 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 FUBP3Q96I24 572 aaKnown RBP eCLIP13.11□□□□□ -0.31
HDAC3-204ENST00000469207 SMPD4Q9NXE4 827 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 CDH9Q9ULB4 789 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 ARHGAP26Q9UNA1 814 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 MTMR6Q9Y217 621 aa13.11□□□□□ -0.31
HDAC3-204ENST00000469207 PATE3B3GLJ2 98 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 F8VP50 259 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 CLDN5O00501 218 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 TGFB1I1O43294 461 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 KCNK5O95279 499 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 APBB3O95704 486 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 TNNC2P02585 160 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 DLATP10515 647 aaKnown RBP13.1□□□□□ -0.31
HDAC3-204ENST00000469207 WARSP23381 471 aaKnown RBP13.1□□□□□ -0.31
HDAC3-204ENST00000469207 GBP1P32455 592 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 GNL1P36915 607 aaPredicted RBP13.1□□□□□ -0.31
HDAC3-204ENST00000469207 MAGEA11P43364 429 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 DUOXA2Q1HG44 320 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 RNF43Q68DV7 783 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 TMEM92Q6UXU6 159 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 C4orf50Q6ZRC1 276 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 FILIP1Q7Z7B0 1213 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 C12orf40Q86WS4 652 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 TTC30AQ86WT1 665 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 CCDC65Q8IXS2 484 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 OR6B3Q8NGW1 331 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 MYCBPAPQ8TBZ2 947 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 USP33Q8TEY7 942 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 RLN3Q8WXF3 142 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 CCDC127Q96BQ5 260 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 SPATA17Q96L03 361 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 LSM14BQ9BX40 385 aaKnown RBP13.1□□□□□ -0.31
HDAC3-204ENST00000469207 TRPM5Q9NZQ8 1165 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 EBF1Q9UH73 591 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 RALYQ9UKM9 306 aaKnown RBP13.1□□□□□ -0.31
HDAC3-204ENST00000469207 R3HCC1Q9Y3T6 440 aaKnown RBP13.1□□□□□ -0.31
HDAC3-204ENST00000469207 MYO16Q9Y6X6 1858 aa13.1□□□□□ -0.31
HDAC3-204ENST00000469207 CNOT1A5YKK6 2376 aaKnown RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 BCLAF3A2AJT9 711 aaKnown RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 ZNF840PA6NDX5 716 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 C4orf47A7E2U8 309 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 FOXD2O60548 495 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 AKAP3O75969 853 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 CAVIN2O95810 425 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 CYP17A1P05093 508 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 PTPN1P18031 435 aaKnown RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 TNNI1P19237 187 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 PDCP20941 246 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 PMLP29590 882 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 MAP1BP46821 2468 aaKnown RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 TAF10Q12962 218 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 NR1H3Q13133 447 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 ALCAMQ13740 583 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 E2F4Q16254 413 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 ANO7Q6IWH7 933 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 VSTM1Q6UX27 236 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 NELFCDQ8IXH7 590 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 TSTD1Q8NFU3 115 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 SPATA18Q8TC71 538 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 ZNF507Q8TCN5 953 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 DHX58Q96C10 678 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 GZF1Q9H116 711 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 VPS45Q9NRW7 570 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 CHORDC1Q9UHD1 332 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-204ENST00000469207 PCDHGA5Q9Y5G8 931 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 CPQQ9Y646 472 aa13.09□□□□□ -0.31
HDAC3-204ENST00000469207 MYOFQ9NZM1 2061 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 CHD8Q9HCK8 2581 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 RHOBTB1O94844 696 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 NFATC1O95644 943 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 TCF3P15923 654 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 ANXA13P27216 316 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 TIE1P35590 1138 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 CASP4P49662 377 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 CYP2J2P51589 502 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 CDH8P55286 799 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 STK38Q15208 465 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 DHCR24Q15392 516 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 SNRNP35Q16560 246 aaKnown RBP13.08□□□□□ -0.32
HDAC3-204ENST00000469207 WDR72Q3MJ13 1102 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 FOXD4L6Q3SYB3 417 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-204ENST00000469207 FOXD4L5Q5VV16 416 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-204ENST00000469207 PSAPL1Q6NUJ1 521 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 RHBDF2Q6PJF5 856 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 FOXD4L3Q6VB84 417 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-204ENST00000469207 EPM2AIP1Q7L775 607 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-204ENST00000469207 WDR49Q8IV35 697 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 ALLCQ8N6M5 410 aa13.08□□□□□ -0.32
HDAC3-204ENST00000469207 LINC00301Q8NCQ3 95 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms