RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 TMEM143Q96AN5 459 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 DNAJC19Q96DA6 116 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 TRMT2BQ96GJ1 504 aaKnown RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 LIN37Q96GY3 246 aaPredicted RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 ZNF668Q96K58 619 aaPredicted RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 PPP1R16BQ96T49 567 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 REEP2Q9BRK0 252 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 KRTAP9-9Q9BYP9 154 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 KRTAP9-4Q9BYQ2 154 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 TRIM9Q9C026 710 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 CDIP1Q9H305 208 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 TRIM39Q9HCM9 518 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 SETD4Q9NVD3 440 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 ANO10Q9NW15 660 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 RMND1Q9NWS8 449 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM53CQ9NYF3 392 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 ERAP1Q9NZ08 941 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 DDX20Q9UHI6 824 aaKnown RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 NRBP1Q9UHY1 535 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 DBR1Q9UK59 544 aaKnown RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 ZNF215Q9UL58 517 aaPredicted RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 PLAAQ9Y263 795 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 COA3Q9Y2R0 106 aaPredicted RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 GDAQ9Y2T3 454 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 Q9Y3F1 56 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 KIAA1217Q5T5P2 1943 aa4.48□□□□□ -1.69
TMEM39A-204ENST00000468545 IGSF9BQ9UPX0 1349 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 PVALEFA0A1B0GWK0 134 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 GOLGA6L3A6NEY3 463 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 BECN2A8MW95 431 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM47E-STBD1D6RA91 191 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ARVCFO00192 962 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ABLIM1O14639 778 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SLC16A4O15374 487 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 PRPF6O94906 941 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 GCNT3O95395 438 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 CRTAMO95727 393 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SOD2P04179 222 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ASGR1P07306 291 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SRGAP2CP0DJJ0 459 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SMIM10L2AP0DMW4 78 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SMIM10L2BP0DMW5 78 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 MYBP10242 640 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 CCL5P13501 91 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SDHBP21912 280 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 KLRC1P26715 233 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 NMT1P30419 496 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SARSP49591 514 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 PEX3P56589 373 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ZNF200P98182 395 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 GUCY1A3Q02108 690 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 STK4Q13043 487 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 COASYQ13057 564 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 PPFIA1Q13136 1202 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 PAK1Q13153 545 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 MORC3Q14149 939 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 NR1I3Q14994 352 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 TPD52L1Q16890 204 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 DPCR1Q3MIW9 517 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ZNF484Q5JVG2 852 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ODR4Q5SWX8 454 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ZNF658Q5TYW1 1059 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 EFCAB12Q6NXP0 572 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 CNNM4Q6P4Q7 775 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 RPTNQ6XPR3 784 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 RBM43Q6ZSC3 357 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 C11orf57Q6ZUT1 292 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 RNF180Q86T96 592 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SFR1Q86XK3 245 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 DCP2Q8IU60 420 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 RHPN2Q8IUC4 686 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 C7orf31Q8N865 590 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 AFAP1L1Q8TED9 768 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 NOC3LQ8WTT2 800 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 KAT2BQ92831 832 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM167AQ96KS9 214 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 IFT74Q96LB3 600 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 MAGEB10Q96LZ2 347 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 CLUHP3Q96NS8 147 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 DEFB118Q96PH6 123 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 GSDMAQ96QA5 445 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 C16orf70Q9BSU1 422 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 MTG1Q9BT17 334 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 FAM49AQ9H0Q0 323 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 POLR3FQ9H1D9 316 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 EPB41L1Q9H4G0 881 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 MRPL44Q9H9J2 332 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 ATP6V0A4Q9HBG4 840 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 PARVGQ9HBI0 331 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 KMT5AQ9NQR1 393 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 SUCLA2Q9P2R7 463 aaPredicted RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 PPARGC1AQ9UBK2 798 aaKnown RBP4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 HDAC6Q9UBN7 1215 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 TUBE1Q9UJT0 475 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 NUDT5Q9UKK9 219 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 COL4A3BPQ9Y5P4 624 aa4.47□□□□□ -1.69
TMEM39A-204ENST00000468545 EMSYQ7Z589 1322 aa4.46□□□□□ -1.69
TMEM39A-204ENST00000468545 SYNRGQ9UMZ2 1314 aa4.46□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms