RNA–Protein interactions for RNA: ENST00000461819.5

CCDC28B-203, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 5

Gene CCDC28B, Length 780 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-203ENST00000461819 PAEPP09466 180 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 ATP1A3P13637 1013 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 TPM4P67936 248 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 CYP4F8P98187 520 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 IFRD2Q12894 506 aaPredicted RBP24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 IQCB1Q15051 598 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 MYRFLQ96LU7 910 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 SMOQ99835 787 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 LSM14BQ9BX40 385 aaKnown RBP24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 SIX2Q9NPC8 291 aa24.2■■□□□ 1.46
CCDC28B-203ENST00000461819 LGALS16A8MUM7 142 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 ASGR2P07307 311 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 VDRP11473 427 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 GOLGA7BQ2TAP0 167 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 ARHGAP17Q68EM7 881 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 CLEC20AQ6ZU45 233 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 MTSS1LQ765P7 747 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 NUP93Q8N1F7 819 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 GPR88Q9GZN0 384 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 CSNK1G1Q9HCP0 422 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 MUTYHQ9UIF7 546 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 DNAJC12Q9UKB3 198 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 KIAA1257Q9ULG3 409 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 BDP1A6H8Y1 2624 aa24.19■■□□□ 1.46
CCDC28B-203ENST00000461819 DLL1O00548 723 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 BEST1O76090 585 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 RTN3O95197 1032 aaPredicted RBP24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 NPR3P17342 541 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 USP8P40818 1118 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 SLC8A3P57103 927 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 USP46P62068 366 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 KCNMA1Q12791 1236 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 STXBP5Q5T5C0 1151 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 GPR158Q5T848 1215 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 LUZP1Q86V48 1076 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 ZMIZ2Q8NF64 920 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 ST13P5Q8NFI4 369 aaPredicted RBP24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 MRPS31Q92665 395 aaKnown RBP24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 KCNK12Q9HB15 430 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 IGSF9Q9P2J2 1179 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 HESX1Q9UBX0 185 aa24.18■■□□□ 1.46
CCDC28B-203ENST00000461819 GOLGA6L19H0YKK7 550 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 RNF225M0QZC1 329 aaPredicted RBP24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 F11P03951 625 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 ZNF132P52740 706 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 SLC5A3P53794 718 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 UBXN1Q04323 297 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 HTR4Q13639 388 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 PTPN21Q16825 1174 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 PCMTD1Q96MG8 357 aaPredicted RBP24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 ZSWIM3Q96MP5 696 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 TTLL2Q9BWV7 592 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 DUSP16Q9BY84 665 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 TSPAN16Q9UKR8 245 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 NUMBLQ9Y6R0 609 aa24.17■■□□□ 1.46
CCDC28B-203ENST00000461819 LRRC10BA6NIK2 292 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 RFX1P22670 979 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 YWHAQP27348 245 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 RAPGEF1Q13905 1077 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 KLHDC7AQ5VTJ3 777 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 PARM1Q6UWI2 310 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 TMEM150AQ86TG1 271 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 ZSCAN18Q8TBC5 510 aaPredicted RBP24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 RSAD2Q8WXG1 361 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 NXPE3Q969Y0 559 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 SLITRK1Q96PX8 696 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 TSPY26PQ9H489 355 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 TASP1Q9H6P5 420 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 AJAP1Q9UKB5 411 aaPredicted RBP24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 SORCS3Q9UPU3 1222 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 CNTN6Q9UQ52 1028 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 MUC3AQ02505 3323 aa24.16■■□□□ 1.46
CCDC28B-203ENST00000461819 ANHXE9PGG2 379 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 O00370 1275 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 TNFRSF10BO14763 440 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 DCXO43602 365 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 BRD2P25440 801 aaKnown RBP24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 DDX6P26196 483 aaKnown RBP eCLIP24.15■■□□□ 1.461e-7■■■■□ 19.8
CCDC28B-203ENST00000461819 BCAT1P54687 386 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 STILQ15468 1287 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 FILIP1LQ4L180 1135 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 FAM78AQ5JUQ0 283 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 POTEHQ6S545 545 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 APTXQ7Z2E3 356 aaKnown RBP24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 ANKRD52Q8NB46 1076 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 SCAMP5Q8TAC9 235 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 TFAP2BQ92481 460 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 SHC3Q92529 594 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 FGF14Q92915 247 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 SMARCD2Q92925 531 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 FBXO32Q969P5 355 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 ASB16Q96NS5 453 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 KXD1Q9BQD3 176 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 TRPC7Q9HCX4 862 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 PNPLA8Q9NP80 782 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 TRPM5Q9NZQ8 1165 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 ZMYM5Q9UJ78 669 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 FHOD1Q9Y613 1164 aa24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 HELZP42694 1942 aaKnown RBP24.15■■□□□ 1.46
CCDC28B-203ENST00000461819 TADA3O75528 432 aa24.14■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms