RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 RUNX3Q13761 415 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 PDGFRLQ15198 375 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 ZNF77Q15935 545 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 TRIM68Q6AZZ1 485 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 MAMSTRQ6ZN01 415 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 Q6ZS52 159 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 SPEM1Q8N4L4 309 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 CPA6Q8N4T0 437 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 ZBTB44Q8NCP5 570 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 RUBCNQ92622 972 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 FAM83CQ9BQN1 747 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 GOLPH3LQ9H4A5 285 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 GDPD2Q9HCC8 539 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 HPS4Q9NQG7 708 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 GKN1Q9NS71 199 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 RBM12Q9NTZ6 932 aaKnown RBP14.86□□□□□ -0.03
USP4-206ENST00000461553 TRPM5Q9NZQ8 1165 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 SMG5Q9UPR3 1016 aaKnown RBP14.86□□□□□ -0.03
USP4-206ENST00000461553 NME7Q9Y5B8 376 aa14.86□□□□□ -0.03
USP4-206ENST00000461553 MYOFQ9NZM1 2061 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 C2orf78A6NCI8 922 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 LILRB5O75023 590 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 C4BPAP04003 597 aaKnown RBP14.85□□□□□ -0.03
USP4-206ENST00000461553 PFKLP17858 780 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 NR2F2P24468 414 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 CXCL12P48061 93 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 NOP14P78316 857 aaKnown RBP14.85□□□□□ -0.03
USP4-206ENST00000461553 DLG4P78352 724 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 SATB1Q01826 763 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 IFRD2Q12894 506 aaPredicted RBP14.85□□□□□ -0.03
USP4-206ENST00000461553 CCINQ13939 588 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 ZACNQ401N2 412 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 ARL14EPQ8N8R7 260 aaPredicted RBP14.85□□□□□ -0.03
USP4-206ENST00000461553 RIN3Q8TB24 985 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 TMC2Q8TDI7 906 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 NELL1Q92832 810 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 SECISBP2LQ93073 1101 aaKnown RBP14.85□□□□□ -0.03
USP4-206ENST00000461553 EXOC4Q96A65 974 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 TNIP3Q96KP6 325 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 C8orf48Q96LL4 319 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 SLITRK1Q96PX8 696 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 MED10Q9BTT4 135 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 TTLL2Q9BWV7 592 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 IMPG2Q9BZV3 1241 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 ZNF518BQ9C0D4 1074 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 EPC1Q9H2F5 836 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 NCDNQ9UBB6 729 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 TRAF3IP3Q9Y228 551 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 DCHS1Q96JQ0 3298 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 EML5Q05BV3 1969 aa14.85□□□□□ -0.03
USP4-206ENST00000461553 MAPK13O15264 365 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 ZNF202O95125 648 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 VNN1O95497 513 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 TDGF1P13385 188 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 KRT13P13646 458 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 ARSAP15289 507 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 TRIM21P19474 475 aaKnown RBP14.84□□□□□ -0.03
USP4-206ENST00000461553 RPL13P26373 211 aaKnown RBP14.84□□□□□ -0.03
USP4-206ENST00000461553 PPP3CCP48454 512 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 USP46P62068 366 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 GRSF1Q12849 480 aaKnown RBP eCLIP14.84□□□□□ -0.03
USP4-206ENST00000461553 GAS6Q14393 721 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 NFIL3Q16649 462 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 INTS8Q75QN2 995 aaKnown RBP14.84□□□□□ -0.03
USP4-206ENST00000461553 FAM35AQ86V20 835 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 SYNPOQ8N3V7 929 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 GUF1Q8N442 669 aaKnown RBP14.84□□□□□ -0.03
USP4-206ENST00000461553 SUMF1Q8NBK3 374 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 OSCP1Q8WVF1 389 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 TAF4BQ92750 862 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 ATP2A3Q93084 1043 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 SMARCD1Q96GM5 515 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 SLC22A12Q96S37 553 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 DUS2Q9NX74 493 aaKnown RBP14.84□□□□□ -0.03
USP4-206ENST00000461553 GCNT4Q9P109 453 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 ARHGAP26Q9UNA1 814 aa14.84□□□□□ -0.03
USP4-206ENST00000461553 GOLGA6L4A6NEF3 574 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 CLDN5O00501 218 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 IKBKBO14920 756 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 PAPSS2O95340 614 aaPredicted RBP14.83□□□□□ -0.04
USP4-206ENST00000461553 TCF3P15923 654 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 HDCP19113 662 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 VAMP7P51809 220 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 CACNA2D1P54289 1103 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 CDH8P55286 799 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 SGSM1Q2NKQ1 1148 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 WDR44Q5JSH3 913 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 FAM186BQ8IYM0 893 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 SH3RF2Q8TEC5 729 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 CYP2S1Q96SQ9 504 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 B3GNT5Q9BYG0 378 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 DMAP1Q9NPF5 467 aaPredicted RBP14.83□□□□□ -0.04
USP4-206ENST00000461553 KRT82Q9NSB4 513 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 RAB23Q9ULC3 237 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 MAPK8IP1Q9UQF2 711 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 WNT6Q9Y6F9 365 aa14.83□□□□□ -0.04
USP4-206ENST00000461553 RTN3O95197 1032 aaPredicted RBP14.82□□□□□ -0.04
USP4-206ENST00000461553 NFATC1O95644 943 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 ABL1P00519 1130 aa14.82□□□□□ -0.04
USP4-206ENST00000461553 HLA-DRAP01903 254 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms