RNA–Protein interactions for RNA: ENST00000461520.5

USP54-208, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 1,212 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-208ENST00000461520 TTC3P53804 2025 aa8.15□□□□□ -1.11
USP54-208ENST00000461520 MYO7AQ13402 2215 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 CYP3A7-CYP3A51PA0A087WV96 503 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 C22orf46C9J442 243 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 CPLX1O14810 134 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 SUSD5O60279 629 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 MGEA5O60502 916 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 GAS7O60861 476 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 GPR32O75388 356 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 ITGB1P05556 798 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 ALADP13716 330 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 CYP3A7P24462 503 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 LTBRP36941 435 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 KCNC1P48547 511 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 JAK3P52333 1124 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 FAM189BP81408 668 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 HYAL1Q12794 435 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 GNL2Q13823 731 aaKnown RBP8.14□□□□□ -1.11
USP54-208ENST00000461520 CAMK1Q14012 370 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 KIZQ2M2Z5 673 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 Q4G0T1 1027 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 PAN2Q504Q3 1202 aaKnown RBP8.14□□□□□ -1.11
USP54-208ENST00000461520 GALNT17Q6IS24 598 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 EFCAB12Q6NXP0 572 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 CPLX2Q6PUV4 134 aaKnown RBP8.14□□□□□ -1.11
USP54-208ENST00000461520 FAM228AQ86W67 206 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 CCDC103Q8IW40 242 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 BLIDQ8IZY5 108 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 METTL13Q8N6R0 699 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 LINC01465Q8N7H1 131 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 RDM1Q8NG50 284 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 SPPL3Q8TCT6 385 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 TBCKQ8TEA7 893 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 SLC5A5Q92911 643 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 MAP7D2Q96T17 732 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 ADAM2Q99965 735 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 SPATA25Q9BR10 227 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 TEKT3Q9BXF9 490 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 ELAC1Q9H777 363 aaKnown RBP8.14□□□□□ -1.11
USP54-208ENST00000461520 ALG13Q9NP73 1137 aaKnown RBP8.14□□□□□ -1.11
USP54-208ENST00000461520 NRBP2Q9NSY0 501 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 TMEM161AQ9NX61 479 aa8.14□□□□□ -1.11
USP54-208ENST00000461520 VTNP04004 478 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 SNRPB2P08579 225 aaKnown RBP8.13□□□□□ -1.11
USP54-208ENST00000461520 MRE11P49959 708 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 CLCN3P51790 818 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 NLRP11P59045 1033 aaKnown RBP8.13□□□□□ -1.11
USP54-208ENST00000461520 UBE3AQ05086 875 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 DLX2Q07687 328 aaPredicted RBP8.13□□□□□ -1.11
USP54-208ENST00000461520 LRCH2Q5VUJ6 765 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 MOXD1Q6UVY6 613 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 LIPIQ6XZB0 460 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 TRMT1LQ7Z2T5 733 aaKnown RBP8.13□□□□□ -1.11
USP54-208ENST00000461520 POF1BQ8WVV4 589 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 CPA5Q8WXQ8 436 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 SYT3Q9BQG1 590 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 UNC45AQ9H3U1 944 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 ZNF318Q5VUA4 2279 aa8.13□□□□□ -1.11
USP54-208ENST00000461520 FSD2A1L4K1 749 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 TBKBP1A7MCY6 615 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 DCXO43602 365 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 CHMP2AO43633 222 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 PSMD10O75832 226 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 CDKL5O76039 1030 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 ZSCAN20P17040 1043 aaPredicted RBP8.12□□□□□ -1.11
USP54-208ENST00000461520 FPR2P25090 351 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 DNAJB1P25685 340 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 HOXC12P31275 282 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 GTF2F1P35269 517 aaKnown RBP eCLIP8.12□□□□□ -1.11
USP54-208ENST00000461520 GATMP50440 423 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 CDC42EP1Q00587 391 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 PRKCEQ02156 737 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 NHLH1Q02575 133 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 ADAM15Q13444 863 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 NONOQ15233 471 aaKnown RBP eCLIP8.12□□□□□ -1.11
USP54-208ENST00000461520 NPY5RQ15761 445 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 SMAD2Q15796 467 aaKnown RBP8.12□□□□□ -1.11
USP54-208ENST00000461520 FXNQ16595 210 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 PRSS53Q2L4Q9 553 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 XKR3Q5GH77 459 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 SPOUT1Q5T280 376 aaKnown RBP8.12□□□□□ -1.11
USP54-208ENST00000461520 FAM102BQ5T8I3 360 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 B3GNT9Q6UX72 402 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 MIER3Q7Z3K6 550 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 ADHFE1Q8IWW8 467 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 LRRC71Q8N4P6 559 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 CXorf38Q8TB03 319 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 MBOAT7Q96N66 472 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 UPF3BQ9BZI7 483 aaKnown RBP8.12□□□□□ -1.11
USP54-208ENST00000461520 ATP6V0A4Q9HBG4 840 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 PDRG1Q9NUG6 133 aa8.12□□□□□ -1.11
USP54-208ENST00000461520 MBTPS2O43462 519 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 TBX10O75333 385 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 FGF18O76093 207 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 CSPG5O95196 566 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 TDP2O95551 362 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 EYA4O95677 639 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 DARSP14868 501 aaKnown RBP8.11□□□□□ -1.11
USP54-208ENST00000461520 XBP1P17861 261 aa8.11□□□□□ -1.11
USP54-208ENST00000461520 LAG3P18627 525 aa8.11□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms