RNA–Protein interactions for RNA: ENST00000460593.1

CPSF3-202, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 1 (best) BASIC

Gene CPSF3, Length 3,157 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-202ENST00000460593 NARFQ9UHQ1 456 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 IKBKGQ9Y6K9 419 aa12.23□□□□□ -0.45
CPSF3-202ENST00000460593 ZNF335Q9H4Z2 1342 aaPredicted RBP12.23□□□□□ -0.45
CPSF3-202ENST00000460593 TCRBV9S1A1TA0A576 114 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 IPO5O00410 1097 aaKnown RBP12.22□□□□□ -0.45
CPSF3-202ENST00000460593 COPEO14579 308 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 MAP3K6O95382 1288 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 PROCP04070 461 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 CD48P09326 243 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 IMPDH2P12268 514 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 IL1R1P14778 569 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 RAG1P15918 1043 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 PHBP35232 272 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 GPC3P51654 580 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 SPP2Q13103 211 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 MAP7Q14244 749 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 UGCGQ16739 394 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 ZNF394Q53GI3 561 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 RABGAP1LQ5R372 815 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 FAXCQ5TGI0 409 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 KLHDC10Q6PID8 442 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 POLNQ7Z5Q5 900 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 FAM71DQ8N9W8 422 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 ZNF516Q92618 1163 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 LIN28AQ9H9Z2 209 aaKnown RBP12.22□□□□□ -0.45
CPSF3-202ENST00000460593 USP29Q9HBJ7 922 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 TMEM8AQ9HCN3 771 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 ZHX2Q9Y6X8 837 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 HLA-DOAP06340 250 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 INHBAP08476 426 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 GMPRP36959 345 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 HPCAP84074 193 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 HIC1Q14526 733 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 TLR1Q15399 786 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 NADK2Q4G0N4 442 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 EFHC1Q5JVL4 640 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 MIER3Q7Z3K6 550 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 PIP4K2CQ8TBX8 421 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 RBM17Q96I25 401 aaKnown RBP12.22□□□□□ -0.45
CPSF3-202ENST00000460593 DHRS4Q9BTZ2 278 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 CCDC106Q9BWC9 280 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 AVENQ9NQS1 362 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-202ENST00000460593 XPNPEP1Q9NQW7 623 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 UBAP1Q9NZ09 502 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 CNTN3Q9P232 1028 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 PRR12Q9ULL5 1215 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 SHOC2Q9UQ13 582 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 FARP1Q9Y4F1 1045 aaPredicted RBP12.22□□□□□ -0.45
CPSF3-202ENST00000460593 I3L4J1 428 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 STIP1P31948 543 aaKnown RBP12.22□□□□□ -0.45
CPSF3-202ENST00000460593 CPOXP36551 454 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 ECE1P42892 770 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 FOLH1Q04609 750 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 CEP55Q53EZ4 464 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 CYP4A22Q5TCH4 519 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 ARHGEF1Q92888 912 aaKnown RBP12.22□□□□□ -0.45
CPSF3-202ENST00000460593 PCDHB4Q9Y5E5 795 aa12.22□□□□□ -0.45
CPSF3-202ENST00000460593 hCG_1818297A0A087WSY0 165 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 E2F8A0AVK6 867 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 PENKP01210 267 aaPredicted RBP12.21□□□□□ -0.45
CPSF3-202ENST00000460593 TFAP2AP05549 437 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 NELFEP18615 380 aaKnown RBP12.21□□□□□ -0.45
CPSF3-202ENST00000460593 RARRES1P49788 294 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 NOMO3P69849 1222 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 VWA5B1Q5TIE3 1220 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 LIN9Q5TKA1 542 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 SLC39A4Q6P5W5 647 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 UGT2A3Q6UWM9 527 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 SDCCAG8Q86SQ7 713 aaPredicted RBP12.21□□□□□ -0.45
CPSF3-202ENST00000460593 SLF2Q8IX21 1173 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 DCAF4Q8WV16 495 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 E2F7Q96AV8 911 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 HSPBAP1Q96EW2 488 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 SENP7Q9BQF6 1050 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 WDR11Q9BZH6 1224 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 FOXP3Q9BZS1 431 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 C1orf112Q9NSG2 853 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 ZNRF3Q9ULT6 936 aa12.21□□□□□ -0.45
CPSF3-202ENST00000460593 TGDSO95455 350 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 HNRNPCP07910 306 aaKnown RBP eCLIP12.21□□□□□ -0.46
CPSF3-202ENST00000460593 PMLP29590 882 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 MRPS5P82675 430 aaKnown RBP12.21□□□□□ -0.46
CPSF3-202ENST00000460593 LMNB2Q03252 620 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 KLHL38Q2WGJ6 581 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 C16orf46Q6P387 395 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 NAT8LQ8N9F0 302 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 STKLD1Q8NE28 680 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 FEZF2Q8TBJ5 459 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 PRPF31Q8WWY3 499 aaKnown RBP12.21□□□□□ -0.46
CPSF3-202ENST00000460593 CLMNQ96JQ2 1002 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 CNBD2Q96M20 576 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 TEKT3Q9BXF9 490 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 AGTPBP1Q9UPW5 1226 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 INPP5FQ9Y2H2 1132 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 ZNF510Q9Y2H8 683 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 SNCAIPQ9Y6H5 919 aa12.21□□□□□ -0.46
CPSF3-202ENST00000460593 ITM2AO43736 263 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 CST8O60676 142 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 SUPT3HO75486 399 aa12.2□□□□□ -0.46
CPSF3-202ENST00000460593 TOM1L1O75674 476 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms