RNA–Protein interactions for RNA: ENST00000460333.5

VPS13D-202, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2

Gene VPS13D, Length 4,910 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-202ENST00000460333 TRIM49CP0CI26 452 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 CD19P15391 556 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 DRD4P21917 467 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 FECHP22830 423 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 GTF2BQ00403 316 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 KDSRQ06136 332 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 PPIDQ08752 370 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 DNAJC24Q6P3W2 148 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 LRRC8BQ6P9F7 803 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 DARS2Q6PI48 645 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 MARK2Q7KZI7 788 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 RHOT1Q8IXI2 618 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 CFAP36Q96G28 342 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 ANKRD36BP1Q96IX9 119 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 INO80BQ9C086 356 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TMEM8AQ9HCN3 771 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 WDR70Q9NW82 654 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 SYBUQ9NX95 663 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 SMARCAL1Q9NZC9 954 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 CNOT8Q9UFF9 292 aaKnown RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 PGAP2Q9UHJ9 254 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 SH3GLB1Q9Y371 365 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TBKBP1A7MCY6 615 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 EXTL3O43909 919 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 MGRN1O60291 552 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 RTN2O75298 545 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 SLC9A1P19634 815 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 S100A1P23297 94 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TCF7P36402 384 aaPredicted RBP6.46□□□□□ -1.38
VPS13D-202ENST00000460333 XIAPP98170 497 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 KCNMA1Q12791 1236 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 DGKZQ13574 1117 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TMC3Q7Z5M5 1100 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 TMEM139Q8IV31 216 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 SIX6OS1Q8N1H7 587 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 EME1Q96AY2 570 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 RPS6KC1Q96S38 1066 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 FAM213AQ9BRX8 229 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 ERAP1Q9NZ08 941 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 FZD1Q9UP38 647 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 RIPK3Q9Y572 518 aa6.46□□□□□ -1.38
VPS13D-202ENST00000460333 ASTN1O14525 1302 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 HSPA1AP0DMV8 641 aaKnown RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 HSPA1BP0DMV9 641 aaKnown RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TBXAS1P24557 533 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 SERPINB9P50453 376 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 CASP5P51878 434 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 RAB15P59190 212 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TBL3Q12788 808 aaKnown RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 SYCP2LQ5T4T6 812 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 ADCK1Q86TW2 530 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TRIM74Q86UV6 250 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TRIM73Q86UV7 250 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 DDX42Q86XP3 938 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 ZBED8Q8IZ13 594 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 GALNT15Q8N3T1 639 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TSEN2Q8NCE0 465 aaKnown RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 STKLD1Q8NE28 680 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 GLIS3Q8NEA6 775 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 SLC35C1Q96A29 364 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 NUP85Q9BW27 656 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 DKK3Q9UBP4 350 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TAGLN3Q9UI15 199 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 ANAPC7Q9UJX3 599 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 AKT3Q9Y243 479 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 PCDHA2Q9Y5H9 948 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 CAPN6Q9Y6Q1 641 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 H3BRJ5 948 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 RASSF9O75901 435 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 UNC5CO95185 931 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 CCDC166P0CW27 439 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 SRGAP2CP0DJJ0 459 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 PSMC3P17980 439 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 CASP4P49662 377 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 ERVK-9P63128 1117 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 EFTUD2Q15029 972 aaKnown RBP eCLIP6.45□□□□□ -1.383e-7■■■□□ 14.9
VPS13D-202ENST00000460333 LVRNQ6Q4G3 990 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TRIM72Q6ZMU5 477 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TMPRSS6Q8IU80 811 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 CREG2Q8IUH2 290 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 MAP4K3Q8IVH8 894 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TPCN2Q8NHX9 752 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 NDNQ99608 321 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 SGIP1Q9BQI5 828 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 HTATIP2Q9BUP3 242 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 PLGRKTQ9HBL7 147 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TIMMDC1Q9NPL8 285 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 TRIM17Q9Y577 477 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 SNX3O60493 162 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 ZC3H11AO75152 810 aaKnown RBP eCLIP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 FAM58BPP0C7Q3 252 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 KLRC1P26715 233 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 COILP38432 576 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 APLP1P51693 650 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 COPAP53621 1224 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 HIRAP54198 1017 aaPredicted RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 ALDH18A1P54886 795 aaKnown RBP6.45□□□□□ -1.38
VPS13D-202ENST00000460333 CNTN2Q02246 1040 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 STX3Q13277 289 aa6.45□□□□□ -1.38
VPS13D-202ENST00000460333 HIF1AQ16665 826 aa6.45□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 172.8 ms