RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 GBA2Q9HCG7 927 aaPredicted RBP15.79■□□□□ 0.12
LDLR-202ENST00000455727 FETUBQ9UGM5 382 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 TBK1Q9UHD2 729 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 PCSK1NQ9UHG2 260 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 TSPAN16Q9UKR8 245 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 SCN1AP35498 2009 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 CD48P09326 243 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 CYP3A5P20815 502 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 CTCFP49711 727 aaPredicted RBP15.79■□□□□ 0.12
LDLR-202ENST00000455727 MKRN3Q13064 507 aaKnown RBP15.79■□□□□ 0.12
LDLR-202ENST00000455727 PCBP1Q15365 356 aaKnown RBP eCLIP15.79■□□□□ 0.12
LDLR-202ENST00000455727 HIF1AQ16665 826 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 DPP9Q86TI2 863 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 RFX6Q8HWS3 928 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 NAT8LQ8N9F0 302 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 SYT17Q9BSW7 474 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 SENP1Q9P0U3 644 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 SLC24A2Q9UI40 661 aa15.79■□□□□ 0.12
LDLR-202ENST00000455727 CCL15-CCL14A0A0B4J2E2 113 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 RASA4BC9J798 803 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 RASA4O43374 803 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 SNX3O60493 162 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 PFKMP08237 780 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 SETSIPP0DME0 302 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 RPL22P35268 128 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 PDIA2Q13087 525 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 FASTKD3Q14CZ7 662 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 LRRC14Q15048 493 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 ZBTB6Q15916 424 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 CCL15Q16663 113 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 PKDCCQ504Y2 493 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 GPR142Q7Z601 462 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 TRABD2AQ86V40 505 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 SRRM1Q8IYB3 904 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 ZBED8Q8IZ13 594 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 RXFP2Q8WXD0 754 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 CPT1BQ92523 772 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 KAT2BQ92831 832 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 SGSM3Q96HU1 749 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 ELAC2Q9BQ52 826 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 ADAMTS10Q9H324 1103 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 NKIRAS1Q9NYS0 192 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 DYNC1LI1Q9Y6G9 523 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 GLTPD2A6NH11 291 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 E7ESA3 106 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 H0YHG0 523 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 MCF2LO15068 1137 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 OAS1P00973 400 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 PDGFRAP16234 1089 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 HOXA11P31270 313 aaPredicted RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 STIP1P31948 543 aaKnown RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 GDF10P55107 478 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 ARL4CP56559 192 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 ACVR2BQ13705 512 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 TFDP2Q14188 446 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 FAM47CQ5HY64 1035 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 FAM183BPQ6ZVS7 135 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 CYP4V2Q6ZWL3 525 aaPredicted RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 PNMA8AQ86V59 439 aaPredicted RBP15.78■□□□□ 0.12
LDLR-202ENST00000455727 LRRC52Q8N7C0 313 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 OR6J1Q8NGC5 347 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 HSPH1Q92598 858 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 USP6NLQ92738 828 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 UPF1Q92900 1129 aaKnown RBP eCLIP15.78■□□□□ 0.123e-8■■■■■ 30
LDLR-202ENST00000455727 TINF2Q9BSI4 451 aa15.78■□□□□ 0.12
LDLR-202ENST00000455727 IQCA1LA6NCM1 817 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 TCP11X1B4DZS4 312 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 E5RJQ4 531 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 DNM1LO00429 736 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 DPYSL4O14531 572 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 SNX16P57768 344 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 EIF3EP60228 445 aaKnown RBP15.77■□□□□ 0.12
LDLR-202ENST00000455727 TAF5Q15542 800 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 OR6B2Q6IFH4 312 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 SLC27A1Q6PCB7 646 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 ANKRD42Q8N9B4 389 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 MGARPQ8TDB4 240 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 BRI3BPQ8WY22 251 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 MAGEB18Q96M61 343 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 PEBP4Q96S96 227 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 NCAPGQ9BPX3 1015 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 CALN1Q9BXU9 219 aa15.77■□□□□ 0.12
LDLR-202ENST00000455727 MAK16Q9BXY0 300 aaKnown RBP15.77■□□□□ 0.12
LDLR-202ENST00000455727 GCOM2Q9BZD3 368 aaPredicted RBP15.77■□□□□ 0.12
LDLR-202ENST00000455727 ZMYND8Q9ULU4 1186 aaPredicted RBP15.77■□□□□ 0.12
LDLR-202ENST00000455727 FAM47DPA6NHR8 397 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 FOXO6A8MYZ6 492 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 PRPF4O43172 522 aaKnown RBP eCLIP15.77■□□□□ 0.116e-9■■□□□ 13.2
LDLR-202ENST00000455727 TSHRP16473 764 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 CBLBQ13191 982 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 PDK2Q15119 407 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 TMED2Q15363 201 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 BOLA3Q53S33 107 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 TRNP1Q6NT89 227 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 DPH6Q7L8W6 267 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 TMEM110Q86TL2 294 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 VSIG1Q86XK7 387 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 UNC45BQ8IWX7 931 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 STK32AQ8WU08 396 aa15.77■□□□□ 0.11
LDLR-202ENST00000455727 SNX27Q96L92 541 aa15.77■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms