RNA–Protein interactions for RNA: ENST00000452724.1

USP40-209, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 453 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-209ENST00000452724 TSHRP16473 764 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 STT3AP46977 705 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 TM4SF4P48230 202 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 CARSP49589 748 aaKnown RBP4.84□□□□□ -1.63
USP40-209ENST00000452724 DGKEP52429 567 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 NXPH1P58417 271 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 HTRA4P83105 476 aaPredicted RBP4.84□□□□□ -1.63
USP40-209ENST00000452724 NHLH1Q02575 133 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 UBE4AQ14139 1066 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 E2F2Q14209 437 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 INSCQ1MX18 579 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 ZNF362Q5T0B9 420 aaPredicted RBP4.84□□□□□ -1.63
USP40-209ENST00000452724 SYCP2LQ5T4T6 812 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 KAZNQ674X7 775 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 YAF2Q8IY57 180 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 CCDC33Q8N5R6 958 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 BPIFB1Q8TDL5 484 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 IPCEF1Q8WWN9 437 aaPredicted RBP4.84□□□□□ -1.63
USP40-209ENST00000452724 IQCDQ96DY2 449 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 PGBD1Q96JS3 809 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 ZC3H10Q96K80 434 aaKnown RBP4.84□□□□□ -1.63
USP40-209ENST00000452724 ZNF700Q9H0M5 742 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 CXorf36Q9H7Y0 433 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 SERHLQ9NQF3 203 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 RGS17Q9UGC6 210 aaPredicted RBP4.84□□□□□ -1.63
USP40-209ENST00000452724 SSX2IPQ9Y2D8 614 aa4.84□□□□□ -1.63
USP40-209ENST00000452724 RASA4BC9J798 803 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 H7C4K7 107 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 PPM1DO15297 605 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 CCP110O43303 1012 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 RASA4O43374 803 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 ANXA2P07355 339 aaKnown RBP4.83□□□□□ -1.64
USP40-209ENST00000452724 RHOP08100 348 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 IFIT2P09913 472 aaKnown RBP4.83□□□□□ -1.64
USP40-209ENST00000452724 KCNA3P22001 575 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 ALDH5A1P51649 535 aaPredicted RBP4.83□□□□□ -1.64
USP40-209ENST00000452724 PRKAG1P54619 331 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 SLC29A2Q14542 456 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 KLHDC7AQ5VTJ3 777 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 DPP9Q86TI2 863 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 SLC15A3Q8IY34 581 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 SDR16C5Q8N3Y7 309 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 ATP11CQ8NB49 1132 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 FKBP10Q96AY3 582 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 TNIP3Q96KP6 325 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 UROC1Q96N76 676 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 MYD88Q99836 296 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 COLEC11Q9BWP8 271 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 KRTAP9-8Q9BYQ0 159 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 KLK15Q9H2R5 256 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 STARD7Q9NQZ5 370 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 KLC4Q9NSK0 619 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 ZNF212Q9UDV6 495 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 MID2Q9UJV3 735 aa4.83□□□□□ -1.64
USP40-209ENST00000452724 ADGRA2Q96PE1 1338 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 RAB27BO00194 218 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 MGST3O14880 152 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 THAP12O43422 761 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 INMTO95050 263 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 CHRM2P08172 466 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 PDHA1P08559 390 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 TNFSF4P23510 183 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 ACVR2AP27037 513 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 PTDSS1P48651 473 aaKnown RBP4.82□□□□□ -1.64
USP40-209ENST00000452724 PDE6CP51160 858 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 EIF2B5Q13144 721 aaKnown RBP4.82□□□□□ -1.64
USP40-209ENST00000452724 ARHGEF7Q14155 803 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 PTPRRQ15256 657 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 CACHD1Q5VU97 1274 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 KIAA0895LQ68EN5 471 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 RNF44Q7L0R7 432 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 SRLQ86TD4 932 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 DTX2Q86UW9 622 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 OR2C3Q8N628 320 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 RNF152Q8N8N0 203 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 ATG4AQ8WYN0 398 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 TFAP2BQ92481 460 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 PPP2R3CQ969Q6 453 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 CCDC138Q96M89 665 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 RIPOR3Q96MK2 946 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 ELAC2Q9BQ52 826 aaKnown RBP4.82□□□□□ -1.64
USP40-209ENST00000452724 DHX36Q9H2U1 1008 aaKnown RBP4.82□□□□□ -1.64
USP40-209ENST00000452724 PADI4Q9UM07 663 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 CDY1Q9Y6F8 540 aa4.82□□□□□ -1.64
USP40-209ENST00000452724 A0A1W2PPC4 97 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 WDR27A2RRH5 827 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 VWC2LB2RUY7 222 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 ADM5C9JUS6 153 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 APOL1O14791 398 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 RRP9O43818 475 aaKnown RBP4.81□□□□□ -1.64
USP40-209ENST00000452724 RASAL1O95294 804 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 CSF1RP07333 972 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 GPD1P21695 349 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 IL1R2P27930 398 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 GRIA3P42263 894 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 CPT1AP50416 773 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 SOX10P56693 466 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 NPY5RQ15761 445 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 TBCCQ15814 346 aa4.81□□□□□ -1.64
USP40-209ENST00000452724 TXNRD1Q16881 649 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms