RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 FSCN2O14926 492 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 HOXA2O43364 376 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 LRCH4O75427 683 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 TCF4P15884 667 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 CYP2C18P33260 490 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 SLC7A5Q01650 507 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 CCDC142Q17RM4 750 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 ADAT2Q7Z6V5 191 aaKnown RBP14.99□□□□□ -0.01
USP39-207ENST00000450066 CNPY3Q9BT09 278 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 MED10Q9BTT4 135 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 PPP1R12CQ9BZL4 782 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 ARFGAP3Q9NP61 516 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 ASNSD1Q9NWL6 643 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 TBX21Q9UL17 535 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 PCDHB8Q9UN66 801 aa14.99□□□□□ -0.01
USP39-207ENST00000450066 F8W810 466 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 RAD51CO43502 376 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 FAM200BP0CF97 657 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 PDGFRAP16234 1089 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 GPD1P21695 349 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 MRPS25P82663 173 aaKnown RBP14.98□□□□□ -0.01
USP39-207ENST00000450066 OVOS1Q6IE37 1185 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 CLEC20AQ6ZU45 233 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 ARCQ7LC44 396 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 PIGZQ86VD9 579 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 RCOR2Q8IZ40 523 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 ARFGAP1Q8N6T3 406 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 CCDC26Q8TAB7 109 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 KCTD13Q8WZ19 329 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 KHSRPQ92945 711 aaKnown RBP eCLIP14.98□□□□□ -0.01
USP39-207ENST00000450066 PCED1BQ96HM7 432 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 CASD1Q96PB1 797 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 DDX56Q9NY93 547 aaKnown RBP14.98□□□□□ -0.01
USP39-207ENST00000450066 TSC2P49815 1807 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 TET1Q8NFU7 2136 aa14.98□□□□□ -0.01
USP39-207ENST00000450066 LOC101059915A0A1B0GWI6 518 aaPredicted RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 RNF8O76064 485 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 KRT7P08729 469 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 PCK1P35558 622 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 FLT3P36888 993 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 OR1G1P47890 313 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 SLC25A11Q02978 314 aaKnown RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 HADHQ16836 314 aaKnown RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 INTS6LQ5JSJ4 861 aaKnown RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 FAM171BQ6P995 826 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 CCNI2Q6ZMN8 369 aaPredicted RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 SLC26A9Q7LBE3 791 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 MAATS1Q7Z4T9 603 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 ZDHHC14Q8IZN3 488 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 THEM5Q8N1Q8 247 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 PRELID2Q8N945 189 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 MAIP1Q8WWC4 291 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 RXFP2Q8WXD0 754 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 RBM41Q96IZ5 413 aaKnown RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.97□□□□□ -0.01
USP39-207ENST00000450066 ZNF446Q9NWS9 450 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 DNAJB4Q9UDY4 337 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 ATP11BQ9Y2G3 1177 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 TTC3P53804 2025 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 TCRBV7S2A1N4TA0A589 114 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 DPYSL4O14531 572 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 TRAPPC3O43617 180 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 ZMYND10O75800 440 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 HEXIM1O94992 359 aaKnown RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 GLI1P08151 1106 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 LCP1P13796 627 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 GJC1P36383 396 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 CETN2P41208 172 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 COPS2P61201 443 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 SIX1Q15475 284 aaPredicted RBP14.97□□□□□ -0.01
USP39-207ENST00000450066 TAF5Q15542 800 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 CYP1B1Q16678 543 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 TRNP1Q6NT89 227 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 FAM35AQ86V20 835 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 CCDC50Q8IVM0 306 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 KRT82Q9NSB4 513 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 AMACRQ9UHK6 382 aa14.97□□□□□ -0.01
USP39-207ENST00000450066 SCN5AQ14524 2016 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 PHF2O75151 1096 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 GRAP2O75791 330 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 AP1G2O75843 785 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 BEST1O76090 585 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 RARAP10276 462 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 TNFRSF8P28908 595 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 CHRNA3P32297 505 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 MAPRE1Q15691 268 aaKnown RBP14.96□□□□□ -0.01
USP39-207ENST00000450066 ATP13A4Q4VNC1 1196 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 DEFB128Q7Z7B8 93 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 NPAS4Q8IUM7 802 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 IFT20Q8IY31 132 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 PKMYT1Q99640 499 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 MRPL9Q9BYD2 267 aaKnown RBP14.96□□□□□ -0.01
USP39-207ENST00000450066 OSBPL8Q9BZF1 889 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 UBXN6Q9BZV1 441 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 C11orf49Q9H6J7 331 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 TMEM39AQ9NV64 488 aa14.96□□□□□ -0.01
USP39-207ENST00000450066 KRT1P04264 644 aa14.96□□□□□ -0.02
USP39-207ENST00000450066 CLTBP09497 229 aa14.96□□□□□ -0.02
USP39-207ENST00000450066 RALAP11233 206 aa14.96□□□□□ -0.02
USP39-207ENST00000450066 MIPP30301 263 aa14.96□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms