RNA–Protein interactions for RNA: ENST00000436177.5

VPS50-203, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 603 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-203ENST00000436177 CFAP221Q4G0U5 840 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 TMEM196Q5HYL7 178 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 LMBRD2Q68DH5 695 aaPredicted RBP8.3□□□□□ -1.08
VPS50-203ENST00000436177 TRIM68Q6AZZ1 485 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 FAM173BQ6P4H8 233 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 PRR23CQ6ZRP0 262 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 CACNA2D4Q7Z3S7 1137 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 SCUBE3Q8IX30 993 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 FAM160A2Q8N612 972 aaPredicted RBP8.3□□□□□ -1.08
VPS50-203ENST00000436177 STKLD1Q8NE28 680 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 GAB3Q8WWW8 586 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 DNAJC19Q96DA6 116 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 TRMT2BQ96GJ1 504 aaKnown RBP8.3□□□□□ -1.08
VPS50-203ENST00000436177 SYT15Q9BQS2 421 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 TNMDQ9H2S6 317 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 SNX25Q9H3E2 840 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 CUEDC2Q9H467 287 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 TMLHEQ9NVH6 421 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 GDAP2Q9NXN4 497 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 MAGEC2Q9UBF1 373 aaPredicted RBP8.3□□□□□ -1.08
VPS50-203ENST00000436177 GTF3C4Q9UKN8 822 aa8.3□□□□□ -1.08
VPS50-203ENST00000436177 ATP8B3O60423 1300 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 TICRRQ7Z2Z1 1910 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 FANCMQ8IYD8 2048 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 CCDC163A0A0D9SF12 145 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 TRDMT1O14717 391 aaKnown RBP8.29□□□□□ -1.08
VPS50-203ENST00000436177 SLC30A4O14863 429 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 TRIM66O15016 1216 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 AXIN1O15169 862 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 STX6O43752 255 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 PHACTR2O75167 634 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 AKAP3O75969 853 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 NOL4O94818 638 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 NFATC1O95644 943 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 APBB3O95704 486 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 TNNI1P19237 187 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 GRIK1P39086 918 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 PXNP49023 591 aaPredicted RBP8.29□□□□□ -1.08
VPS50-203ENST00000436177 CYP2J2P51589 502 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 PSMC1P62191 440 aaKnown RBP8.29□□□□□ -1.08
VPS50-203ENST00000436177 TRPC3Q13507 836 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 PPM1JQ5JR12 505 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 FAM26FQ5R3K3 315 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 FSTL4Q6MZW2 842 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 VSTM1Q6UX27 236 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 DPH6Q7L8W6 267 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 TMEM150AQ86TG1 271 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 WDR49Q8IV35 697 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 IQUBQ8NA54 791 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 SH3RF2Q8TEC5 729 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 MYLPFQ96A32 169 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 DHX58Q96C10 678 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 INTS4Q96HW7 963 aaKnown RBP8.29□□□□□ -1.08
VPS50-203ENST00000436177 LOXL4Q96JB6 756 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 USP28Q96RU2 1077 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 FAM83CQ9BQN1 747 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 STRA6Q9BX79 667 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 ECT2Q9H8V3 914 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 HPS4Q9NQG7 708 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 INTS13Q9NVM9 706 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 HSPBP1Q9NZL4 362 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 TRPM5Q9NZQ8 1165 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 CDH9Q9ULB4 789 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 WNT6Q9Y6F9 365 aa8.29□□□□□ -1.08
VPS50-203ENST00000436177 PDCD11Q14690 1871 aaKnown RBP8.29□□□□□ -1.08
VPS50-203ENST00000436177 FRMD3A2A2Y4 597 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 SLC9A3R1O14745 358 aaPredicted RBP8.28□□□□□ -1.08
VPS50-203ENST00000436177 SPTLC2O15270 562 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 EIF3DO15371 548 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS50-203ENST00000436177 ABL1P00519 1130 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 EGFP01133 1207 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 PDGFRBP09619 1106 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 HDCP19113 662 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 TRIM21P19474 475 aaKnown RBP8.28□□□□□ -1.08
VPS50-203ENST00000436177 BDNFP23560 247 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 GBP1P32455 592 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 WNT7BP56706 349 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 USP4Q13107 963 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 BIRC3Q13489 604 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 SNRNP35Q16560 246 aaKnown RBP8.28□□□□□ -1.08
VPS50-203ENST00000436177 SOWAHAQ2M3V2 549 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 MDH1BQ5I0G3 518 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 DENND5BQ6ZUT9 1274 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 C11orf74Q86VG3 221 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 OSTM1Q86WC4 334 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 DDX42Q86XP3 938 aaKnown RBP eCLIP8.28□□□□□ -1.08
VPS50-203ENST00000436177 CBWD2Q8IUF1 395 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 CAMKK1Q8N5S9 505 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 ARL14EPQ8N8R7 260 aaPredicted RBP8.28□□□□□ -1.08
VPS50-203ENST00000436177 ZSWIM2Q8NEG5 633 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 TSTD1Q8NFU3 115 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 OR6B3Q8NGW1 331 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 RPLP0P6Q8NHW5 317 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 OSCP1Q8WVF1 389 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 CD101Q93033 1021 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 CCDC127Q96BQ5 260 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 FAM84AQ96KN4 292 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 MYRFLQ96LU7 910 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 CEP295NLQ96MC4 621 aa8.28□□□□□ -1.08
VPS50-203ENST00000436177 SLITRK1Q96PX8 696 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms