RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 C11orf63Q6NUN7 778 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 PMF1Q6P1K2 205 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 CLEC20AQ6ZU45 233 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 PEX26Q7Z412 305 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 DDX53Q86TM3 631 aaKnown RBP18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 XYLT1Q86Y38 959 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 ZDHHC17Q8IUH5 632 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 FEZF2Q8TBJ5 459 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 MCEEQ96PE7 176 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 SLC4A5Q9BY07 1137 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 COG5Q9UP83 839 aa18.05■□□□□ 0.48
CCDC28B-202ENST00000421922 TULP2O00295 520 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 C2CD2LO14523 706 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 BUB1BO60566 1050 aaPredicted RBP18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 FTCDO95954 541 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 CTNNB1P35222 781 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 CDR1P51861 262 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 GSCP56915 257 aaPredicted RBP18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 SMARCB1Q12824 385 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 MAMLD1Q13495 774 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 LLGL2Q6P1M3 1020 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 PRSS55Q6UWB4 352 aaPredicted RBP18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 PIGZQ86VD9 579 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 PIK3R5Q8WYR1 880 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 FUBP3Q96I24 572 aaKnown RBP eCLIP18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 PKMYT1Q99640 499 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 PRO3102Q9H379 93 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 METTL5Q9NRN9 209 aaKnown RBP18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 AMFRQ9UKV5 643 aa18.04■□□□□ 0.48
CCDC28B-202ENST00000421922 SPOPO43791 374 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 URI1O94763 535 aaPredicted RBP18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 KRT3P12035 628 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 GRIK1P39086 918 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 CREMQ03060 361 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 FAM183BPQ6ZVS7 135 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 PAQR9Q6ZVX9 377 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 TAS1R1Q7RTX1 841 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 LRRTM3Q86VH5 581 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 VPS52Q8N1B4 723 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 GADD45GIP1Q8TAE8 222 aaPredicted RBP18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 SP7Q8TDD2 431 aaPredicted RBP18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 C2orf15Q8WU43 125 aaKnown RBP18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 TMLHEQ9NVH6 421 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 MTRRQ9UBK8 725 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 IP6K2Q9UHH9 426 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 SSX2IPQ9Y2D8 614 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 BACE2Q9Y5Z0 518 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 CDY1Q9Y6F8 540 aa18.03■□□□□ 0.48
CCDC28B-202ENST00000421922 ENC1O14682 589 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 TRIM66O15016 1216 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 FGF18O76093 207 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 ADIGQ0VDE8 80 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 TMEM110Q86TL2 294 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 SCN4BQ8IWT1 228 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 FBXO22Q8NEZ5 403 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 SPPL2BQ8TCT7 592 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 KCTD13Q8WZ19 329 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 CLP1Q92989 425 aaKnown RBP18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 MCRS1Q96EZ8 462 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 PGLYRP2Q96PD5 576 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 SMOQ99835 787 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 RHOBTB2Q9BYZ6 727 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 MRPL17Q9NRX2 175 aaKnown RBP18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 TJP2Q9UDY2 1190 aa18.02■□□□□ 0.48
CCDC28B-202ENST00000421922 PATJQ8NI35 1801 aa18.02■□□□□ 0.47
CCDC28B-202ENST00000421922 SIGLEC16A6NMB1 481 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 DLL1O00548 723 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 SART1O43290 800 aaKnown RBP18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 FBXO21O94952 628 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 SLC6A3Q01959 620 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 DSG1Q02413 1049 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 GPR17Q13304 367 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 RPS6KA1Q15418 735 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 CFAP221Q4G0U5 840 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 RASIP1Q5U651 963 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 VSTM1Q6UX27 236 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 RNF168Q8IYW5 571 aaPredicted RBP18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 LRRC57Q8N9N7 239 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 GOLGA1Q92805 767 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 BTBD6Q96KE9 485 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 VN1R3Q9BXE9 311 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 UBXN6Q9BZV1 441 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 UBE2OQ9C0C9 1292 aaKnown RBP18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 ABCB6Q9NP58 842 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 PNPLA8Q9NP80 782 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 CHST7Q9NS84 486 aa18.01■□□□□ 0.47
CCDC28B-202ENST00000421922 BEST1O76090 585 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 GJB6O95452 261 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 ATP1A1P05023 1023 aaKnown RBP18■□□□□ 0.47
CCDC28B-202ENST00000421922 CYP2F1P24903 491 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 DNAJB2P25686 324 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 SSR1P43307 286 aaKnown RBP18■□□□□ 0.47
CCDC28B-202ENST00000421922 DNA2P51530 1060 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 TKTL1P51854 596 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 RNASE9P60153 205 aaKnown RBP18■□□□□ 0.47
CCDC28B-202ENST00000421922 PTPROQ16827 1216 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 C9orf50Q5SZB4 431 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 SCUBE3Q8IX30 993 aa18■□□□□ 0.47
CCDC28B-202ENST00000421922 UBL4BQ8N7F7 174 aa18■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms