RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 DBR1Q9UK59 544 aaKnown RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 SHOC2Q9UQ13 582 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 SH3BP5LQ7L8J4 393 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 C7orf25Q9BPX7 421 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 IFNGR2P38484 337 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 PSMD4P55036 377 aaKnown RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 KRT78Q8N1N4 520 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 SFRP1Q8N474 314 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 NOA1Q8NC60 698 aaKnown RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 OR6P1Q8NGX9 317 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 RFT1Q96AA3 541 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 FAM89AQ96GI7 184 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 NDNQ99608 321 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 C2orf40Q9H1Z8 148 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 SEC24AO95486 1093 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 GCP02774 474 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 MLNP12872 115 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 RCVRNP35243 200 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 ZC2HC1CQ53FD0 456 aaPredicted RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 TTC23Q5W5X9 447 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 KRT77Q7Z794 578 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 SPAG16Q8N0X2 631 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 HES6Q96HZ4 224 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 HEMGNQ9BXL5 484 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 FAM220BPB1ANY3 271 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 ADD2P35612 726 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 AKR1D1P51857 326 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 RNF43Q68DV7 783 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 C4orf33Q8N1A6 199 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 CEP170P1Q96L14 293 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 CLK4Q9HAZ1 481 aaKnown RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 PIH1D3Q9NQM4 214 aaKnown RBP13.34□□□□□ -0.27
COL6A3-206ENST00000409809 TBC1D22BQ9NU19 505 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 PTTG2Q9NZH5 202 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 POLG2Q9UHN1 485 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 ZNF221Q9UK13 617 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 PIK3CDO00329 1044 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 CLIC2O15247 247 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 UNC5CO95185 931 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 STARP49675 285 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 VPS45Q9NRW7 570 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 GDAQ9Y2T3 454 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 IRGMA1A4Y4 181 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 RBP1P09455 135 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 POLA2Q14181 598 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 ZDHHC13Q8IUH4 622 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 SLITRK2Q9H156 845 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 MAGEE1Q9HCI5 957 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 PLAGL2Q9UPG8 496 aa13.34□□□□□ -0.27
COL6A3-206ENST00000409809 NOS1APO75052 506 aaPredicted RBP13.33□□□□□ -0.27
COL6A3-206ENST00000409809 NPTXRO95502 500 aa13.33□□□□□ -0.27
COL6A3-206ENST00000409809 WEE2P0C1S8 567 aa13.33□□□□□ -0.27
COL6A3-206ENST00000409809 ME2P23368 584 aa13.33□□□□□ -0.27
COL6A3-206ENST00000409809 AAGABQ6PD74 315 aa13.33□□□□□ -0.27
COL6A3-206ENST00000409809 OXNAD1Q96HP4 312 aaPredicted RBP13.33□□□□□ -0.27
COL6A3-206ENST00000409809 PNKPQ96T60 521 aa13.33□□□□□ -0.27
COL6A3-206ENST00000409809 MUC13Q9H3R2 512 aa13.33□□□□□ -0.27
COL6A3-206ENST00000409809 GPC6Q9Y625 555 aaPredicted RBP13.33□□□□□ -0.27
COL6A3-206ENST00000409809 NINQ8N4C6 2090 aa13.33□□□□□ -0.27
COL6A3-206ENST00000409809 METTL21EPA6NDL7 271 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 TULP2O00295 520 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 PCCAP05165 728 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 ALDH1B1P30837 517 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 EIF2B5Q13144 721 aaKnown RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 KYAT3Q6YP21 454 aaKnown RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 UNC45BQ8IWX7 931 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 DHRSXQ8N5I4 330 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 C1orf54Q8WWF1 131 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 ITGA8P53708 1063 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 MFSD14BQ5SR56 506 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 PSMA8Q8TAA3 256 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 MYLPFQ96A32 169 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 L3MBTL3Q96JM7 780 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 EYA1Q99502 592 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 ARHGEF33A8MVX0 844 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 WWP2O00308 870 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 CNTN1Q12860 1018 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 SPDYAQ5MJ70 313 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 TCF7L2Q9NQB0 619 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 RHOBTB3O94955 611 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 CAPGP40121 348 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 TRAPPC3LQ5T215 181 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 C11orf63Q6NUN7 778 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 C8orf59Q8N0T1 100 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 KCTD14Q9BQ13 255 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 GANQ9H2C0 597 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 SP110Q9HB58 689 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 STOX2Q9P2F5 926 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 HAT1O14929 419 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 HOXC9P31274 260 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 SLC26A3P40879 764 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 SHROOM1Q2M3G4 852 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 ZNF589Q86UQ0 364 aaPredicted RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 SGMS1Q86VZ5 419 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 TTC30AQ86WT1 665 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 DHFR2Q86XF0 187 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 TMEM120AQ9BXJ8 343 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 SNX9Q9Y5X1 595 aa13.33□□□□□ -0.28
COL6A3-206ENST00000409809 EIF6P56537 245 aaKnown RBP13.33□□□□□ -0.28
COL6A3-206ENST00000409809 FBXW4P57775 412 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms