RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 SYT15Q9BQS2 421 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 DKK3Q9UBP4 350 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 GULP1Q9UBP9 304 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 SEPT3Q9UH03 358 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 NDOR1Q9UHB4 597 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 ARHGAP26Q9UNA1 814 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 KPNA3O00505 521 aaPredicted RBP7.61□□□□□ -1.19
SCN9A-202ENST00000409435 COBLO75128 1261 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 ATP5HO75947 161 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 RHBDL3P58872 404 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 MAP3K10Q02779 954 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 RPS6KA1Q15418 735 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 CATSPER3Q86XQ3 398 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 LEMD2Q8NC56 503 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 ASAP3Q8TDY4 903 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 FAM167BQ9BTA0 163 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 BRD8Q9H0E9 1235 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 UPF3AQ9H1J1 476 aaKnown RBP7.61□□□□□ -1.19
SCN9A-202ENST00000409435 AFF4Q9UHB7 1163 aaKnown RBP7.61□□□□□ -1.19
SCN9A-202ENST00000409435 ZMYM5Q9UJ78 669 aa7.61□□□□□ -1.19
SCN9A-202ENST00000409435 KIAA1210Q9ULL0 1709 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 OR6C75A6NL08 312 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PDE2AO00408 941 aaPredicted RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 SARSP49591 514 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TERF2Q15554 542 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 EFHC1Q5JVL4 640 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 EOGTQ5NDL2 527 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TRMT10CQ7L0Y3 403 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ENOSF1Q7L5Y1 443 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 NIPA1Q7RTP0 329 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 KCTD17Q8N5Z5 321 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ATP11CQ8NB49 1132 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 CLIC6Q96NY7 704 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ELOVL4Q9GZR5 314 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 MAF1Q9H063 256 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 AMFRQ9UKV5 643 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 IFT172Q9UG01 1749 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 SLIT3O75094 1523 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 WDR47O94967 919 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 EOMESO95936 686 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 CA3P07451 260 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 SLFN14P0C7P3 912 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 CYP11B2P19099 503 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 HLA-DPA1P20036 260 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 NOS2P35228 1153 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 GJA8P48165 433 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 SMARCB1Q12824 385 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 NDUFA5Q16718 116 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 GOLGA7BQ2TAP0 167 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 RETSATQ6NUM9 610 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PEX26Q7Z412 305 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ZNF438Q7Z4V0 828 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 NANOGNBQ7Z5D8 188 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ENOX1Q8TC92 643 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PHOSPHO2Q8TCD6 241 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TRIB2Q92519 343 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 CDCA3Q99618 268 aaPredicted RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 INTS2Q9H0H0 1204 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 LMAN2LQ9H0V9 348 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 RNPEPQ9H4A4 650 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 FAM105AQ9NUU6 356 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 MAD2L2Q9UI95 211 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 SETD1AO15047 1707 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 KCNJ18B7U540 433 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 INPPL1O15357 1258 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D4O60343 1298 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TSPAN3O60637 253 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 HALP42357 657 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 MSH2P43246 934 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 RGS7P49802 495 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 KCNJ12Q14500 433 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ZC3H12BQ5HYM0 836 aaKnown RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 HECTD3Q5T447 861 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ATG16L1Q676U5 607 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PARP9Q8IXQ6 854 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 GRK7Q8WTQ7 553 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 P2RX5Q93086 422 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ZNF212Q9UDV6 495 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3DA0A087WVF3 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3IA0A087WXS9 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3EA0A087X179 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3KA0A087X1G2 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3FA6NER0 549 aaPredicted RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 LRRIQ3A6PVS8 624 aaPredicted RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3LB9A6J9 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PRPF4O43172 522 aaKnown RBP eCLIP7.6□□□□□ -1.196e-9■□□□□ 11.3
SCN9A-202ENST00000409435 DIAPH2O60879 1101 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 GPC4O75487 556 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ZNF189O75820 626 aaPredicted RBP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PDE5AO76074 875 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3HP0C7X1 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 AARSP49588 968 aaKnown RBP eCLIP7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PNOCQ13519 176 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 PDIA5Q14554 519 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 DCAF6Q58WW2 860 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TEDDM1Q5T9Z0 273 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3GQ6DHY5 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 ITPRIPL1Q6GPH6 555 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 TBC1D3CQ6IPX1 549 aa7.6□□□□□ -1.19
SCN9A-202ENST00000409435 UNC13DQ70J99 1090 aa7.6□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms