RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 KRT36O76013 467 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 CETPP11597 493 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 HIRAP54198 1017 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 KLHL38Q2WGJ6 581 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 MMEL1Q495T6 779 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 SNX30Q5VWJ9 437 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 PPP1R2P3Q6NXS1 205 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 MICALL2Q8IY33 904 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 NDUFAF2Q8N183 169 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 PPP1R14BQ96C90 147 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 SCYL1Q96KG9 808 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 LRRC19Q9H756 370 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 AGO4Q9HCK5 861 aaKnown RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 NRBP2Q9NSY0 501 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ZC3H7BQ9UGR2 993 aaKnown RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 IRS2Q9Y4H2 1338 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF200P98182 395 aaPredicted RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 GEN1Q17RS7 908 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 DNAAF3Q8N9W5 541 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 TMEM120AQ9BXJ8 343 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 KLHL25Q9H0H3 589 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 MYOZ2Q9NPC6 264 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF302Q9NR11 478 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 SLC17A7Q9P2U7 560 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 UMODL1Q5DID0 1318 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 SPDYE5A6NIY4 337 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 MEI4A8MW99 385 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 FSCN2O14926 492 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 DGAT1O75907 488 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 PDGFRAP16234 1089 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 EEF1DP29692 281 aaKnown RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 DSG3P32926 999 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 GALK1P51570 392 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 WDR4P57081 412 aaKnown RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ROR1Q01973 937 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ATP1A4Q13733 1029 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 EMC2Q15006 297 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ZBTB41Q5SVQ8 909 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 SPOCD1Q6ZMY3 1216 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 RINLQ6ZS11 566 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 PRPF39Q86UA1 669 aaKnown RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 SIAH1Q8IUQ4 282 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 OR5B17Q8NGF7 314 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 NSUN6Q8TEA1 469 aaKnown RBP12.44□□□□□ -0.42
HMGB1-206ENST00000405805 FERMT1Q9BQL6 677 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 CEP41Q9BYV8 373 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF408Q9H9D4 720 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 COL20A1Q9P218 1284 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 PDP2Q9P2J9 529 aa12.44□□□□□ -0.42
HMGB1-206ENST00000405805 NEMP1O14524 444 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 PEX10O60683 326 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 VHLP40337 213 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 ELK3P41970 407 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 PTDSS1P48651 473 aaKnown RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 MRPS15P82914 257 aaKnown RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 CENPCQ03188 943 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 GAD2Q05329 585 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 MCL1Q07820 350 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 C16orf72Q14CZ0 275 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 SYDE1Q6ZW31 735 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 RAPH1Q70E73 1250 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 ENOSF1Q7L5Y1 443 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 NSL1Q96IY1 281 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 MECRQ9BV79 373 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 DHX35Q9H5Z1 703 aaKnown RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 ZMYND8Q9ULU4 1186 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF232Q9UNY5 417 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 AKT3Q9Y243 479 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 MRPL42Q9Y6G3 142 aaKnown RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 FAM237BA0A1B0GVD1 139 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 C5orf60A6NFR6 353 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 A6NJR5 290 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 WNT10BO00744 389 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 MAPK6Q16659 721 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 TATDN1Q6P1N9 297 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 GADL1Q6ZQY3 521 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 ZNF280CQ8ND82 737 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 FAM13CQ8NE31 585 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 MTBPQ96DY7 904 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 CATSPER2Q96P56 530 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 ASCC2Q9H1I8 757 aaPredicted RBP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 STAU2Q9NUL3 570 aaKnown RBP eCLIP12.43□□□□□ -0.42
HMGB1-206ENST00000405805 FAM49BQ9NUQ9 324 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 GIPC1O14908 333 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 CALB2P22676 271 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 SFNP31947 248 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 NUMBP49757 651 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 FAAP100Q0VG06 881 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 BNIP1Q12981 228 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 PTK6Q13882 451 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 C6orf183Q5T699 404 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 DCAF15Q66K64 600 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 NPNTQ6UXI9 565 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 OTOAQ7RTW8 1153 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 TMEM161BQ8NDZ6 487 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 RFWD2Q8NHY2 731 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 BSNDQ8WZ55 320 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 HERPUD2Q9BSE4 406 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 NACA2Q9H009 215 aa12.43□□□□□ -0.42
HMGB1-206ENST00000405805 DEFB129Q9H1M3 183 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms