RNA–Protein interactions for RNA: ENST00000399429.7

COL28A1-201, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL28A1, Length 4,277 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-201ENST00000399429 DNAAF3Q8N9W5 541 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ZSWIM2Q8NEG5 633 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 DCUN1D1Q96GG9 259 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 APOPT1Q96IL0 206 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 FAM84BQ96KN1 310 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 MCEEQ96PE7 176 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 FHDC1Q9C0D6 1143 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 GTSE1Q9NYZ3 720 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ERCC6L2Q5T890 1561 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PTPRUQ92729 1446 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 BCL10O95999 233 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 TFPTP0C1Z6 253 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PPATQ06203 517 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 SCARA5Q6ZMJ2 495 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 FASTKD5Q7L8L6 764 aaKnown RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PTAR1Q7Z6K3 402 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ANKRD23Q86SG2 305 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 HPS1Q92902 700 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PBXIP1Q96AQ6 731 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 VPS50Q96JG6 964 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 IKZF4Q9H2S9 585 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PCDH18Q9HCL0 1135 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 KMT5AQ9NQR1 393 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PARVAQ9NVD7 372 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 GRID1Q9ULK0 1009 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 GMEB1Q9Y692 573 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PPLO60437 1756 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 M0R3G1 203 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 MAGEC1O60732 1142 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 MAP3K6O95382 1288 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 CALCAP01258 141 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 OSBPP22059 807 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ELK3P41970 407 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ROR1Q01973 937 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ITGA7Q13683 1181 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 THOC7Q6I9Y2 204 aaKnown RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 AAGABQ6PD74 315 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ADCK1Q86TW2 530 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 CPNE8Q86YQ8 564 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ARHGEF19Q8IW93 802 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 MIPEPQ99797 713 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 FAM213AQ9BRX8 229 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ZC4H2Q9NQZ6 224 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 RABGEF1Q9UJ41 708 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 NCANO14594 1321 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 GTPBP10A4D1E9 387 aaKnown RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 KPNA4O00629 521 aaPredicted RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ATP2B4P23634 1241 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ACTR3P61158 418 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 DAB2P98082 770 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 RALGPS1Q5JS13 557 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 KCNT1Q5JUK3 1230 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ZNF618Q5T7W0 954 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 GPR107Q5VW38 600 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 PACS1Q6VY07 963 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 RTKN2Q8IZC4 609 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 CCNYQ8ND76 341 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 ZC3H15Q8WU90 426 aaKnown RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 NRG4Q8WWG1 115 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 SHISA4Q96DD7 197 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 HSPBP1Q9NZL4 362 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 GNEQ9Y223 722 aaKnown RBP9.68□□□□□ -0.86
COL28A1-201ENST00000399429 STXBP5LQ9Y2K9 1186 aa9.68□□□□□ -0.86
COL28A1-201ENST00000399429 SLIT1O75093 1534 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SAC3D1A6NKF1 404 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 KPNA7A9QM74 516 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 DLGAP3O95886 979 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 EIF2AK2P19525 551 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 TFE3P19532 575 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 FUT4P22083 530 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 S100A1P23297 94 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 EIF4BP23588 611 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 RPA1P27694 616 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SESN2P58004 480 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 QRICH1Q2TAL8 776 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 NOP9Q86U38 636 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 KBTBD2Q8IY47 623 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 CCDC33Q8N5R6 958 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 PHC3Q8NDX5 983 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 GABPB2Q8TAK5 448 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SPATA18Q8TC71 538 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 DQX1Q8TE96 717 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 HDAC11Q96DB2 347 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 FAM20AQ96MK3 541 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SAE1Q9UBE0 346 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 NXF1Q9UBU9 619 aaKnown RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 ZNF839A8K0R7 811 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SPTLC1O15269 473 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 KCNN4O15554 427 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 PRPF4O43172 522 aaKnown RBP eCLIP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 ZBTB11O95625 1053 aaPredicted RBP9.67□□□□□ -0.86
COL28A1-201ENST00000399429 RARBP10826 455 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 IL10P22301 178 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 KIF19Q2TAC6 998 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SFT2D3Q587I9 215 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SLC30A10Q6XR72 485 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 RNF19BQ6ZMZ0 732 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 SLC26A11Q86WA9 606 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 PQLC1Q8N2U9 271 aa9.67□□□□□ -0.86
COL28A1-201ENST00000399429 GATA6Q92908 595 aa9.67□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms