RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 SFR1Q86XK3 245 aa17.26■□□□□ 0.35
CUX2-202ENST00000397643 CCDC33Q8N5R6 958 aa17.26■□□□□ 0.35
CUX2-202ENST00000397643 LRRC52Q8N7C0 313 aa17.26■□□□□ 0.35
CUX2-202ENST00000397643 PIGKQ92643 395 aa17.26■□□□□ 0.35
CUX2-202ENST00000397643 FUBP3Q96I24 572 aaKnown RBP eCLIP17.26■□□□□ 0.35
CUX2-202ENST00000397643 GDAP2Q9NXN4 497 aa17.26■□□□□ 0.35
CUX2-202ENST00000397643 FREM2Q5SZK8 3169 aa17.26■□□□□ 0.35
CUX2-202ENST00000397643 HDCP19113 662 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 P2RY2P41231 377 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 PTGER3P43115 390 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 UAP1L1Q3KQV9 507 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 TRIM61Q5EBN2 209 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 FAM171BQ6P995 826 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 ADGRF2Q8IZF7 708 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 FRMD1Q8N878 549 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 SPATA18Q8TC71 538 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 ZCCHC14Q8WYQ9 949 aaKnown RBP17.25■□□□□ 0.35
CUX2-202ENST00000397643 LARP4BQ92615 738 aaKnown RBP17.25■□□□□ 0.35
CUX2-202ENST00000397643 HVCN1Q96D96 273 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 TMEM74BQ9NUR3 256 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 MBD1Q9UIS9 605 aaPredicted RBP17.25■□□□□ 0.35
CUX2-202ENST00000397643 SIX4Q9UIU6 781 aa17.25■□□□□ 0.35
CUX2-202ENST00000397643 LEFTY2O00292 366 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 HYAL3O43820 417 aaPredicted RBP17.24■□□□□ 0.35
CUX2-202ENST00000397643 HUS1O60921 280 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 ZSCAN22P10073 491 aaPredicted RBP17.24■□□□□ 0.35
CUX2-202ENST00000397643 MAGEA11P43364 429 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 USP46P62068 366 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 NUCB2P80303 420 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 MRPS21P82921 87 aaKnown RBP17.24■□□□□ 0.35
CUX2-202ENST00000397643 SOWAHAQ2M3V2 549 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 LIMS2Q7Z4I7 341 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 BRAPQ7Z569 592 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 PIP4P1Q86T03 277 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 SPATA2LQ8IUW3 424 aaPredicted RBP17.24■□□□□ 0.35
CUX2-202ENST00000397643 SCN4BQ8IWT1 228 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 TOP6BLQ8N6T0 577 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 FSIP1Q8NA03 581 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 IL17RCQ8NAC3 791 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 RLN3Q8WXF3 142 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 SAAL1Q96ER3 474 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 FAM213AQ9BRX8 229 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 ZSCAN16Q9H4T2 348 aaPredicted RBP17.24■□□□□ 0.35
CUX2-202ENST00000397643 CIZ1Q9ULV3 898 aaPredicted RBP17.24■□□□□ 0.35
CUX2-202ENST00000397643 NEUROG3Q9Y4Z2 214 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 SNX9Q9Y5X1 595 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 ITPR1Q14643 2758 aa17.24■□□□□ 0.35
CUX2-202ENST00000397643 SGK1O00141 431 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 TNFRSF10BO14763 440 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 ATP2C2O75185 946 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 OLFM2O95897 454 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 PFKLP17858 780 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 DDIT3P35638 169 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 LMAN2Q12907 356 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 POSTNQ15063 836 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 PEAR1Q5VY43 1037 aaPredicted RBP17.23■□□□□ 0.35
CUX2-202ENST00000397643 ARMCX6Q7L4S7 300 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 FILIP1Q7Z7B0 1213 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 C12orf40Q86WS4 652 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 ALLCQ8N6M5 410 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 KBTBD7Q8WVZ9 684 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 SPATA17Q96L03 361 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 CRTAC1Q9NQ79 661 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 KLK13Q9UKR3 277 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 ITGA11Q9UKX5 1188 aa17.23■□□□□ 0.35
CUX2-202ENST00000397643 MYOFQ9NZM1 2061 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 ADAM23O75077 832 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 ENGP17813 658 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 PCSK1P29120 753 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 LONP1P36776 959 aaKnown RBP17.22■□□□□ 0.35
CUX2-202ENST00000397643 KIR2DL1P43626 348 aaPredicted RBP17.22■□□□□ 0.35
CUX2-202ENST00000397643 MAPK8P45983 427 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 SLC6A11P48066 632 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 LHX1P48742 406 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 PSMC1P62191 440 aaKnown RBP17.22■□□□□ 0.35
CUX2-202ENST00000397643 SLC7A9P82251 487 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 RING1Q06587 406 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 RESTQ13127 1097 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 DHCR24Q15392 516 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 MAP7D1Q3KQU3 841 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 VSTM1Q6UX27 236 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 LPCAT2Q7L5N7 544 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 TTC30AQ86WT1 665 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 SYT12Q8IV01 421 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 TMEFF1Q8IYR6 380 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 ADGRG2Q8IZP9 1017 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 CSGALNACT2Q8N6G5 542 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 KIAA1958Q8N8K9 716 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 TXNDC5Q8NBS9 432 aaKnown RBP17.22■□□□□ 0.35
CUX2-202ENST00000397643 MYLPFQ96A32 169 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 TTLL2Q9BWV7 592 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 MTMR12Q9C0I1 747 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 RNF38Q9H0F5 515 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 RBAKQ9NYW8 714 aaPredicted RBP17.22■□□□□ 0.35
CUX2-202ENST00000397643 MSRB2Q9Y3D2 182 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 SMG1Q96Q15 3661 aaKnown RBP17.22■□□□□ 0.35
CUX2-202ENST00000397643 NBEAQ8NFP9 2946 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 PCDH15Q96QU1 1955 aa17.22■□□□□ 0.35
CUX2-202ENST00000397643 ATXN2Q99700 1313 aaKnown RBP17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms