RNA–Protein interactions for RNA: ENST00000397204.8

CAPN3-208, Transcript of calpain 3, humanhuman

TSL 1 (best) BASIC

Gene CAPN3, Length 1,237 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-208ENST00000397204 CFAP221Q4G0U5 840 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 LARP1BQ659C4 914 aaKnown RBP9.4□□□□□ -0.9
CAPN3-208ENST00000397204 RNF43Q68DV7 783 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 BRAPQ7Z569 592 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 C11orf74Q86VG3 221 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 EFCAB13Q8IY85 973 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 PDCL2Q8N4E4 241 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 LRRC52Q8N7C0 313 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 FSIP1Q8NA03 581 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 EHBP1Q8NDI1 1231 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 OSCP1Q8WVF1 389 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 CD101Q93033 1021 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 ATP2A3Q93084 1043 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 ACDQ96AP0 544 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 FUBP3Q96I24 572 aaKnown RBP eCLIP9.4□□□□□ -0.9
CAPN3-208ENST00000397204 TMX3Q96JJ7 454 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 CYP2S1Q96SQ9 504 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 STRA6Q9BX79 667 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 DUSP15Q9H1R2 295 aaPredicted RBP9.4□□□□□ -0.9
CAPN3-208ENST00000397204 TMLHEQ9NVH6 421 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 DUS2Q9NX74 493 aaKnown RBP9.4□□□□□ -0.9
CAPN3-208ENST00000397204 GDAP2Q9NXN4 497 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 DDX43Q9NXZ2 648 aaKnown RBP9.4□□□□□ -0.9
CAPN3-208ENST00000397204 SEL1LQ9UBV2 794 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 AGAP1Q9UPQ3 857 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 EXOC7Q9UPT5 735 aa9.4□□□□□ -0.9
CAPN3-208ENST00000397204 SPAG17Q6Q759 2223 aa9.4□□□□□ -0.91
CAPN3-208ENST00000397204 ZFYVE26Q68DK2 2539 aa9.4□□□□□ -0.91
CAPN3-208ENST00000397204 ANKRD11Q6UB99 2663 aaPredicted RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 TRAV19A0A0A6YYK7 116 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 BCLAF3A2AJT9 711 aaKnown RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 GABRDO14764 452 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 CAVIN2O95810 425 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 TCF3P15923 654 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 GAP43P17677 238 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 CYP2F1P24903 491 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 PCSK1P29120 753 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 POLR2BP30876 1174 aaKnown RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 MAGEA11P43364 429 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 IFNAR2P48551 515 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 PDE6CP51160 858 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 RBP5P82980 135 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 TFAMQ00059 246 aaKnown RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 DMC1Q14565 340 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 EML3Q32P44 896 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 USP39Q53GS9 565 aaKnown RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 INTS6LQ5JSJ4 861 aaKnown RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 DAB2IPQ5VWQ8 1189 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 DPH6Q7L8W6 267 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 SPATA2LQ8IUW3 424 aaPredicted RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 CSGALNACT2Q8N6G5 542 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 KIAA1958Q8N8K9 716 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 C1orf127Q8N9H9 656 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 ZNF511Q8NB15 262 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 RPLP0P6Q8NHW5 317 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 SNIP1Q8TAD8 396 aaKnown RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 CEP295NLQ96MC4 621 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 ACCSQ96QU6 501 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 PKMYT1Q99640 499 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 FAM213AQ9BRX8 229 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 POLR3BQ9NW08 1133 aaPredicted RBP9.39□□□□□ -0.91
CAPN3-208ENST00000397204 GCNT4Q9P109 453 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 GTF3C4Q9UKN8 822 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 L1RE1Q9UN81 338 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 IGF2RP11717 2491 aa9.39□□□□□ -0.91
CAPN3-208ENST00000397204 PDCD11Q14690 1871 aaKnown RBP9.38□□□□□ -0.91
CAPN3-208ENST00000397204 GON4LQ3T8J9 2241 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 J3QL48 77 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 ITGB3P05106 788 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 CKMP06732 381 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 PFKLP17858 780 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 HDCP19113 662 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 GARTP22102 1010 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 GPR15P49685 360 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 CREB5Q02930 508 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 GRIN1Q05586 938 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 ZNF77Q15935 545 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 L1TD1Q5T7N2 865 aaKnown RBP9.38□□□□□ -0.91
CAPN3-208ENST00000397204 SDHAF4Q5VUM1 108 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 FAM171BQ6P995 826 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 VSTM1Q6UX27 236 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 SV2BQ7L1I2 683 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 DYMQ7RTS9 669 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 SFR1Q86XK3 245 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 BRSK2Q8IWQ3 736 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 TOP6BLQ8N6T0 577 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 CXorf38Q8TB03 319 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 RIN3Q8TB24 985 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 EZH1Q92800 747 aaPredicted RBP9.38□□□□□ -0.91
CAPN3-208ENST00000397204 HHIPQ96QV1 700 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 SLC22A12Q96S37 553 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 LINC00597Q9H2U6 94 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 SMOC1Q9H4F8 434 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 MRPL44Q9H9J2 332 aaKnown RBP9.38□□□□□ -0.91
CAPN3-208ENST00000397204 TRPC7Q9HCX4 862 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 STK17AQ9UEE5 414 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 CCDC39Q9UFE4 941 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 ITGA11Q9UKX5 1188 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 SMC3Q9UQE7 1217 aa9.38□□□□□ -0.91
CAPN3-208ENST00000397204 R3HCC1Q9Y3T6 440 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms