RNA–Protein interactions for RNA: ENST00000395454.6

SCAF11-204, Transcript of SR-related CTD associated factor 11, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SCAF11, Length 1,931 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-204ENST00000395454 DDX47Q9H0S4 455 aaKnown RBP15.94■□□□□ 0.14
SCAF11-204ENST00000395454 MSRAQ9UJ68 235 aa15.94■□□□□ 0.14
SCAF11-204ENST00000395454 MTUS1Q9ULD2 1270 aa15.94■□□□□ 0.14
SCAF11-204ENST00000395454 KIAA1257Q9ULG3 409 aa15.94■□□□□ 0.14
SCAF11-204ENST00000395454 BARX2Q9UMQ3 279 aaPredicted RBP15.94■□□□□ 0.14
SCAF11-204ENST00000395454 COLQQ9Y215 455 aaPredicted RBP15.94■□□□□ 0.14
SCAF11-204ENST00000395454 YBX2Q9Y2T7 364 aaKnown RBP15.94■□□□□ 0.14
SCAF11-204ENST00000395454 CEP83Q9Y592 693 aa15.94■□□□□ 0.14
SCAF11-204ENST00000395454 PCDHB12Q9Y5F1 795 aa15.94■□□□□ 0.14
SCAF11-204ENST00000395454 TMEM191CA6NGB0 347 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 KPNA7A9QM74 516 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 SPTLC1O15269 473 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 ARHGEF15O94989 841 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 LINC00271P0C7V0 271 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 RAP1GAPP47736 663 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 ZNF211Q13398 564 aaPredicted RBP15.93■□□□□ 0.14
SCAF11-204ENST00000395454 CUL1Q13616 776 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 SV2CQ496J9 727 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 SEL1L2Q5TEA6 688 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 LLGL2Q6P1M3 1020 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 MAATS1Q7Z4T9 603 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 SLC13A5Q86YT5 568 aaPredicted RBP15.93■□□□□ 0.14
SCAF11-204ENST00000395454 C12orf50Q8NA57 414 aaPredicted RBP15.93■□□□□ 0.14
SCAF11-204ENST00000395454 C3orf20Q8ND61 904 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 FEZF2Q8TBJ5 459 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 TMEM176AQ96HP8 235 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 TWNKQ96RR1 684 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 MARCH5Q9NX47 278 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 ADAM28Q9UKQ2 775 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 STRIP2Q9ULQ0 834 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 SNX9Q9Y5X1 595 aa15.93■□□□□ 0.14
SCAF11-204ENST00000395454 I3L4J1 428 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 ECHS1P30084 290 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CTNNB1P35222 781 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 BRCC3P46736 316 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CDH8P55286 799 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 MRPS25P82663 173 aaKnown RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 GUCY2DQ02846 1103 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 DHX34Q14147 1143 aaKnown RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 SMC1AQ14683 1233 aaKnown RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 SIX1Q15475 284 aaPredicted RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 RAB30Q15771 203 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 ZNF394Q53GI3 561 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 GSPT2Q8IYD1 628 aaKnown RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 ZDHHC14Q8IZN3 488 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 MREGQ8N565 214 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 NIPA2Q8N8Q9 360 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CCDC26Q8TAB7 109 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 GADD45GIP1Q8TAE8 222 aaPredicted RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CASKIN2Q8WXE0 1202 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 PLVAPQ9BX97 442 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 EPB41L5Q9HCM4 733 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 HMGXB4Q9UGU5 601 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 PCYOX1Q9UHG3 505 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 HPCAL4Q9UM19 191 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 WDR3Q9UNX4 943 aaKnown RBP eCLIP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 TRANK1O15050 2925 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 NLRC5Q86WI3 1866 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 ZSCAN5CA6NGD5 496 aaPredicted RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 TMEM189-UBE2V1I3L0A0 370 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 FSCN2O14926 492 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 PHF2O75151 1096 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 VDRP11473 427 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CHRNA3P32297 505 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CARSP49589 748 aaKnown RBP15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CBX1P83916 185 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CNGA2Q16280 664 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 C2CD6Q53TS8 623 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 DENND1BQ6P3S1 775 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CD300LGQ6UXG3 332 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 DSTYKQ6XUX3 929 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 SPRED2Q7Z698 418 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 PRELID2Q8N945 189 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 TMEM169Q96HH4 297 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 IGSF21Q96ID5 467 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 C17orf80Q9BSJ5 609 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 IP6K2Q9UHH9 426 aa15.92■□□□□ 0.14
SCAF11-204ENST00000395454 CARNS1A5YM72 827 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 O00370 1275 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 DNAJB2P25686 324 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 PPM1AP35813 382 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 GABRB2P47870 512 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 PTPN20Q4JDL3 420 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 TIGD5Q53EQ6 642 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 LRRC38Q5VT99 294 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 PRPF38BQ5VTL8 546 aaKnown RBP15.91■□□□□ 0.14
SCAF11-204ENST00000395454 AADACL2Q6P093 401 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 LIMS2Q7Z4I7 341 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 KATNAL2Q8IYT4 538 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 SLC39A11Q8N1S5 342 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 FNIP1Q8TF40 1166 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 BCL7CQ8WUZ0 217 aaPredicted RBP15.91■□□□□ 0.14
SCAF11-204ENST00000395454 NKX2-4Q9H2Z4 354 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 SLC28A3Q9HAS3 691 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 SPG21Q9NZD8 308 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 AMACRQ9UHK6 382 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 CYTH4Q9UIA0 394 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.91■□□□□ 0.14
SCAF11-204ENST00000395454 RWDD3Q9Y3V2 267 aa15.91■□□□□ 0.14
SCAF11-204ENST00000395454 SF3B1O75533 1304 aaKnown RBP eCLIP15.91■□□□□ 0.141e-6■■■■■ 107.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms