RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 HEATR9A2RTY3 570 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 FAM153BP0C7A2 387 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 GLRBP48167 497 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 CENPAP49450 140 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 PSMC5P62195 406 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 FAM153CQ494X1 144 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 AGKQ53H12 422 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 AKIRIN2Q53H80 203 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 BTBD8Q5XKL5 378 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 TYW3Q6IPR3 259 aaKnown RBP12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ATG14Q6ZNE5 492 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 LENG1Q96BZ8 264 aaPredicted RBP12.27□□□□□ -0.45
SYNPO-202ENST00000394243 KIF12Q96FN5 646 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 FAR2Q96K12 515 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 PLEKHG4BQ96PX9 1271 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 KCTD14Q9BQ13 255 aaPredicted RBP12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ZBTB1Q9Y2K1 713 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 TRAPPC3O43617 180 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF682O95780 498 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 PRIM2P49643 509 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 CHN2P52757 468 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 DDR2Q16832 855 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF341Q9BYN7 854 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 ENTPD7Q9NQZ7 604 aa12.27□□□□□ -0.45
SYNPO-202ENST00000394243 F8W810 466 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 SFNP31947 248 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 C1DQ13901 141 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 OXNAD1Q96HP4 312 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 FHDC1Q9C0D6 1143 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 C2orf40Q9H1Z8 148 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 SETD1BQ9UPS6 1966 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 EEF2KO00418 725 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 KRT6AP02538 564 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 RRM2P31350 389 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF844Q08AG5 666 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 POLD3Q15054 466 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 SVOPQ8N4V2 548 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 CENPTQ96BT3 561 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF333Q96JL9 665 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 FAM167AQ96KS9 214 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 APOL5Q9BWW9 433 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 DGCR6LQ9BY27 220 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 GSG1L2A8MUP6 293 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TNPO2O14787 897 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 MLNP12872 115 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 PTGER2P43116 358 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 AKR1D1P51857 326 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 ALX1Q15699 326 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 KHDRBS2Q5VWX1 349 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 POU5F2Q8N7G0 328 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 LACRTQ9GZZ8 138 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 SEMA6AQ9H2E6 1030 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 NRDE2Q9H7Z3 1164 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 IARS2Q9NSE4 1012 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 BTBD3Q9Y2F9 522 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TBX22Q9Y458 520 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 ZSCAN5CA6NGD5 496 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 SNTNA6NMZ2 147 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TGM2P21980 687 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TAF5Q15542 800 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 SNRNP35Q16560 246 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 AGAP9Q5VTM2 703 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 ZSCAN18Q8TBC5 510 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 COPS7BQ9H9Q2 264 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 CYP4F12Q9HCS2 524 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TUFT1Q9NNX1 390 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 EIF3LQ9Y262 564 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 PGM3O95394 542 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 PTDSS1P48651 473 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 CCT8P50990 548 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 IFI35P80217 286 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 NCOA4Q13772 614 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 EDRF1Q3B7T1 1238 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TWF2Q6IBS0 349 aaKnown RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 LRRC71Q8N4P6 559 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 RNF148Q8N7C7 305 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 APOL4Q9BPW4 351 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 STK32BQ9NY57 414 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TUBGCP4Q9UGJ1 667 aa12.26□□□□□ -0.45
SYNPO-202ENST00000394243 CORO1CQ9ULV4 474 aaPredicted RBP12.26□□□□□ -0.45
SYNPO-202ENST00000394243 TK2O00142 265 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 RIPK2O43353 540 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 ETS2P15036 469 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 IL6STP40189 918 aaPredicted RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 CSE1LP55060 971 aaKnown RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 PTK6Q13882 451 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 NRF1Q16656 503 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 PCDHB2Q9Y5E7 798 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 AATKQ6ZMQ8 1374 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 MAP3K13O43283 966 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 YWHABP31946 246 aaKnown RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 RPL10AP62906 217 aaKnown RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 PDK1Q15118 436 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 ZC2HC1CQ53FD0 456 aaPredicted RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 FRMD8Q9BZ67 464 aaPredicted RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 DMAP1Q9NPF5 467 aaPredicted RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 ZNF446Q9NWS9 450 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 TUBA8Q9NY65 449 aaPredicted RBP12.25□□□□□ -0.45
SYNPO-202ENST00000394243 SPASTQ9UBP0 616 aa12.25□□□□□ -0.45
SYNPO-202ENST00000394243 RPS6KL1Q9Y6S9 549 aa12.25□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms