RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GOLGA6L7A0A1B0GV03 622 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 POC1B-GALNT4F8VUJ3 575 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 HOXA11P31270 313 aaPredicted RBP14.03□□□□□ -0.16
CCDC3-202ENST00000378839 CETN2P41208 172 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 RGS7P49802 495 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 INCA1Q0VD86 236 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 HIC1Q14526 733 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 FAM102AQ5T9C2 384 aaPredicted RBP14.03□□□□□ -0.16
CCDC3-202ENST00000378839 TRABD2AQ86V40 505 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 IGDCC3Q8IVU1 814 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 SPOCK2Q92563 424 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 KDM4CQ9H3R0 1056 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 HAUS2Q9NVX0 235 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 TSPAN16Q9UKR8 245 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 EXOC1LA0A1B0GW35 172 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 RASA4BC9J798 803 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 H3BRB1 525 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 RASA4O43374 803 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 TFE3P19532 575 aaPredicted RBP14.03□□□□□ -0.16
CCDC3-202ENST00000378839 IL4RP24394 825 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 SSTR1P30872 391 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 KIZQ2M2Z5 673 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 TAX1BP1Q86VP1 789 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 AGGF1Q8N302 714 aaeCLIP14.03□□□□□ -0.16
CCDC3-202ENST00000378839 FAM71DQ8N9W8 422 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 GPRC5AQ8NFJ5 357 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 ASB7Q9H672 318 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 TUT1Q9H6E5 874 aaKnown RBP14.03□□□□□ -0.16
CCDC3-202ENST00000378839 SLC40A1Q9NP59 571 aa14.03□□□□□ -0.16
CCDC3-202ENST00000378839 C2CD4BA6NLJ0 364 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 BTBD19C9JJ37 291 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 H0YHG0 523 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 PDHXO00330 501 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 MGAT5Q09328 741 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 SNAPC2Q13487 334 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 ZKSCAN8Q15776 578 aaPredicted RBP14.02□□□□□ -0.16
CCDC3-202ENST00000378839 PPP1R26Q5T8A7 1209 aaPredicted RBP14.02□□□□□ -0.16
CCDC3-202ENST00000378839 PMF1Q6P1K2 205 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 TTC30AQ86WT1 665 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 ANKLE1Q8NAG6 615 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 KCTD6Q8NC69 237 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 RXFP2Q8WXD0 754 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 CFAP57Q96MR6 1250 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 NCAPGQ9BPX3 1015 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 EIF2AQ9BY44 585 aaKnown RBP14.02□□□□□ -0.16
CCDC3-202ENST00000378839 GPATCH2LQ9NWQ4 482 aa14.02□□□□□ -0.16
CCDC3-202ENST00000378839 BARX2Q9UMQ3 279 aaPredicted RBP14.02□□□□□ -0.16
CCDC3-202ENST00000378839 ENDOD1O94919 500 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 KRT7P08729 469 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 FGFR1P11362 822 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 VDRP11473 427 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 ATICP31939 592 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 ITIH4Q14624 930 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 GRIK4Q16099 956 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 NUGGCQ68CJ6 796 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 DENND1AQ8TEH3 1009 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 EMID1Q96A84 441 aaPredicted RBP14.02□□□□□ -0.17
CCDC3-202ENST00000378839 C18orf25Q96B23 403 aaPredicted RBP14.02□□□□□ -0.17
CCDC3-202ENST00000378839 ADPGKQ9BRR6 497 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 SETD4Q9NVD3 440 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 TUBGCP4Q9UGJ1 667 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 RABGEF1Q9UJ41 708 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 ZMYND8Q9ULU4 1186 aaPredicted RBP14.02□□□□□ -0.17
CCDC3-202ENST00000378839 EFR3BQ9Y2G0 817 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 BRCA2P51587 3418 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 HMGCRP04035 888 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 TAC1P20366 129 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 ZNF143P52747 638 aaPredicted RBP14.02□□□□□ -0.17
CCDC3-202ENST00000378839 TNFAIP2Q03169 654 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 CDO1Q16878 200 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 CCDC14Q49A88 953 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 USP50Q70EL3 339 aaPredicted RBP14.02□□□□□ -0.17
CCDC3-202ENST00000378839 RFX6Q8HWS3 928 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 C4orf33Q8N1A6 199 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 CCHCR1Q8TD31 782 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 DYDC1Q8WWB3 177 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 ACAP3Q96P50 834 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 CALN1Q9BXU9 219 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 VPS37BQ9H9H4 285 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 CYP3A43Q9HB55 503 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 SLC12A4Q9UP95 1085 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 SHOC2Q9UQ13 582 aa14.02□□□□□ -0.17
CCDC3-202ENST00000378839 MAGEB2O15479 319 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 CA9Q16790 459 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 PKDCCQ504Y2 493 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 ZC3H12AQ5D1E8 599 aaKnown RBP14.01□□□□□ -0.17
CCDC3-202ENST00000378839 LCLAT1Q6UWP7 414 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 KIF12Q96FN5 646 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 MAK16Q9BXY0 300 aaKnown RBP14.01□□□□□ -0.17
CCDC3-202ENST00000378839 B3GNT5Q9BYG0 378 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 FOXP3Q9BZS1 431 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 ADAMTS10Q9H324 1103 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 GBA2Q9HCG7 927 aaPredicted RBP14.01□□□□□ -0.17
CCDC3-202ENST00000378839 STAU2Q9NUL3 570 aaKnown RBP eCLIP14.01□□□□□ -0.17
CCDC3-202ENST00000378839 SNTG2Q9NY99 539 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 MAP3K6O95382 1288 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 DPYSL3Q14195 570 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 ACOT1Q86TX2 421 aa14.01□□□□□ -0.17
CCDC3-202ENST00000378839 L3MBTL3Q96JM7 780 aaPredicted RBP14.01□□□□□ -0.17
CCDC3-202ENST00000378839 TGS1Q96RS0 853 aaKnown RBP14.01□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms