RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 ZNF507Q8TCN5 953 aa12.19□□□□□ -0.46
COL9A1-202ENST00000357250 PI4K2AQ9BTU6 479 aa12.19□□□□□ -0.46
COL9A1-202ENST00000357250 RRN3Q9NYV6 651 aa12.19□□□□□ -0.46
COL9A1-202ENST00000357250 PKP3Q9Y446 797 aa12.19□□□□□ -0.46
COL9A1-202ENST00000357250 EVPLLA8MZ36 301 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 SGPL1O95470 568 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 ATP5BP06576 529 aaKnown RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 KCNA3P22001 575 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 EPHB2P29323 1055 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 HERVK_113P62684 666 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 IRX1P78414 480 aaPredicted RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 KPNB1Q14974 876 aaKnown RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 FAM83AQ86UY5 434 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 CBWD2Q8IUF1 395 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 DNERQ8NFT8 737 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 RAET1EQ8TD07 263 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 ZNF512Q96ME7 567 aaPredicted RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 PRDM16Q9HAZ2 1276 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 CD274Q9NZQ7 290 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 DSEQ9UL01 958 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 SOX13Q9UN79 622 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 NCAM1P13591 858 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 SHMT1P34896 483 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 GCLCP48506 637 aaPredicted RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 CYP24A1Q07973 514 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 GJB7Q6PEY0 223 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 SLC26A11Q86WA9 606 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 LRRC71Q8N4P6 559 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 IPMKQ8NFU5 416 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 NUDT12Q9BQG2 462 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 ARHGAP20Q9P2F6 1191 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 CDV3Q9UKY7 258 aaKnown RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 RAB21Q9UL25 225 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 NPTXRO95502 500 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 ETFBP38117 255 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 CHSY1Q86X52 802 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 ARID3BQ8IVW6 561 aaPredicted RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 UNC45BQ8IWX7 931 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 LRRC34Q8IZ02 419 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 DTX3LQ8TDB6 740 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 PCDH9Q9HC56 1237 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 MPP6Q9NZW5 540 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 MARCOQ9UEW3 520 aaPredicted RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 APPL1Q9UKG1 709 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 PHTF1Q9UMS5 762 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 AIM2O14862 343 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 GRIN3BO60391 1043 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 TGM2P21980 687 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 ATP6V1E1P36543 226 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 BACE1P56817 501 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 GCNT1Q02742 428 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 FBXW10Q5XX13 1052 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 CLEC4FQ8N1N0 589 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 CERS5Q8N5B7 392 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 UBA3Q8TBC4 463 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 USP33Q8TEY7 942 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 ZMAT2Q96NC0 199 aaKnown RBP12.18□□□□□ -0.46
COL9A1-202ENST00000357250 KCND1Q9NSA2 647 aa12.18□□□□□ -0.46
COL9A1-202ENST00000357250 SUPT3HB4E1H0 165 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 GRAP2O75791 330 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 AKT1P31749 480 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 SPDYAQ5MJ70 313 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 NBPF12Q5TAG4 269 aaPredicted RBP12.17□□□□□ -0.46
COL9A1-202ENST00000357250 BRD8Q9H0E9 1235 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 WDCPQ9H6R7 721 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 NMRK1Q9NWW6 199 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 SCN3BQ9NY72 215 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 SLC39A10Q9ULF5 831 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 RPS6KL1Q9Y6S9 549 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 PEAK1Q9H792 1746 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 RGPD8O14715 1765 aaPredicted RBP12.17□□□□□ -0.46
COL9A1-202ENST00000357250 A0A087X0B3 334 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 MAGEB16A2A368 324 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 NKRFO15226 690 aaKnown RBP eCLIP12.17□□□□□ -0.46
COL9A1-202ENST00000357250 PJA2O43164 708 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 AKAP3O75969 853 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 WASHC5Q12768 1159 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 DNAJC3Q13217 504 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 CLEC16AQ2KHT3 1053 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 SMTNL2Q2TAL5 461 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 TRIM69Q86WT6 500 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 CDR2LQ86X02 465 aaPredicted RBP12.17□□□□□ -0.46
COL9A1-202ENST00000357250 ZDHHC17Q8IUH5 632 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 DDI1Q8WTU0 396 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 FAM163AQ96GL9 167 aaPredicted RBP12.17□□□□□ -0.46
COL9A1-202ENST00000357250 LACRTQ9GZZ8 138 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 MUC3BQ9H195 1237 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 EFCAB1Q9HAE3 211 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 FAM95CA0A1B0GW59 222 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 PRPF4O43172 522 aaKnown RBP eCLIP12.17□□□□□ -0.46
COL9A1-202ENST00000357250 KRT8P05787 483 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 SLC11A2P49281 568 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 PCYT1AP49585 367 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 OAZ1P54368 228 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 PRKAA2P54646 552 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 CYTH1Q15438 398 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 APOBEC3HQ6NTF7 200 aaKnown RBP12.17□□□□□ -0.46
COL9A1-202ENST00000357250 SPOCD1Q6ZMY3 1216 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 NT5DC4Q86YG4 428 aa12.17□□□□□ -0.46
COL9A1-202ENST00000357250 PAWRQ96IZ0 340 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms