RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 C4orf19Q8IY42 314 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 GRAMD1CQ8IYS0 662 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 C12orf76Q8N812 135 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-201ENST00000355766 CCDC150Q8NCX0 1101 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 TMEM174Q8WUU8 243 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 SEPT1Q8WYJ6 367 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 ERCC4Q92889 916 aaPredicted RBP7.57□□□□□ -1.2
VPS13A-201ENST00000355766 GLG1Q92896 1179 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 GAL3ST3Q96A11 431 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 DNAJC19Q96DA6 116 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 HSPA12BQ96MM6 686 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 ADAM2Q99965 735 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 WNT10AQ9GZT5 417 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 TMEM117Q9H0C3 514 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 SMARCAD1Q9H4L7 1026 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 ELAC1Q9H777 363 aaKnown RBP7.57□□□□□ -1.2
VPS13A-201ENST00000355766 TBC1D17Q9HA65 648 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 KCNK12Q9HB15 430 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 ATP6V0A4Q9HBG4 840 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 DLGAP2Q9P1A6 1054 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 NCDNQ9UBB6 729 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 WNT16Q9UBV4 365 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 KCNG1Q9UIX4 513 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 PCDHA2Q9Y5H9 948 aa7.57□□□□□ -1.2
VPS13A-201ENST00000355766 ITIH6Q6UXX5 1313 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 SMIM35A0A1B0GVV1 85 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 GSTTP1A0A1W2PQM5 241 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 MYMKA6NI61 221 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 PRR5-ARHGAP8B1AHC4 643 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 EIF3DO15371 548 aaKnown RBP eCLIP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 TBCAO75347 108 aaKnown RBP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 MED24O75448 989 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 RPS6KA5O75582 802 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 GNA14O95837 355 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 PTMAP06454 111 aaKnown RBP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 EPCAMP16422 314 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 CYP11B2P19099 503 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 CCNE1P24864 410 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 CA8P35219 290 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 QARSP47897 775 aaKnown RBP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 PSMC5P62195 406 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 ARHGAP8P85298 464 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 FANCCQ00597 558 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 COL9A2Q14055 689 aaPredicted RBP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 TRIM14Q14142 442 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 EDRF1Q3B7T1 1238 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 FAM26FQ5R3K3 315 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 ODR4Q5SWX8 454 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 CENPPQ6IPU0 288 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 LRRC55Q6ZSA7 311 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 GPBP1Q86WP2 473 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 C1orf210Q8IVY1 113 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 SLC39A11Q8N1S5 342 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 GOLGA5Q8TBA6 731 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 FEZF2Q8TBJ5 459 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 LRRC15Q8TF66 581 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 NELFBQ8WX92 580 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 CASD1Q96PB1 797 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 MIPEPQ99797 713 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 LXNQ9BS40 222 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 RTKNQ9BST9 563 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 ZBP1Q9H171 429 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 BLZF1Q9H2G9 400 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 SFXN1Q9H9B4 322 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 C17orf75Q9HAS0 396 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 ATP13A1Q9HD20 1204 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 SEMA3GQ9NS98 782 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 ANKEF1Q9NU02 776 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 RNF19AQ9NV58 838 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 SPG21Q9NZD8 308 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 IGSF9Q9P2J2 1179 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 LIMA1Q9UHB6 759 aaKnown RBP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 ZKSCAN5Q9Y2L8 839 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 NOC2LQ9Y3T9 749 aaKnown RBP7.56□□□□□ -1.2
VPS13A-201ENST00000355766 COL4A3BPQ9Y5P4 624 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 CACNA1GO43497 2377 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 CHD8Q9HCK8 2581 aa7.56□□□□□ -1.2
VPS13A-201ENST00000355766 FNDC1Q4ZHG4 1894 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 MAP1BP46821 2468 aaKnown RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 ATP9AO75110 1047 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 SLITRK3O94933 977 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 SERPINC1P01008 464 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 DCNP07585 359 aaKnown RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 SRFP11831 508 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 PRCPP42785 496 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 SNRPFP62306 86 aaKnown RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 ITGB3BPQ13352 177 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 HSP90AA2PQ14568 343 aaPredicted RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 KCNMB1Q16558 191 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 NFIL3Q16649 462 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 FILIP1LQ4L180 1135 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 FYB2Q5VWT5 728 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 TTI2Q6NXR4 508 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 TMC5Q6UXY8 1006 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 MIER3Q7Z3K6 550 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 KCNK18Q7Z418 384 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 GPR149Q86SP6 731 aa7.55□□□□□ -1.2
VPS13A-201ENST00000355766 ZC3H3Q8IXZ2 948 aaKnown RBP7.55□□□□□ -1.2
VPS13A-201ENST00000355766 NME8Q8N427 588 aa7.55□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms