RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 PRPF4O43172 522 aaKnown RBP eCLIP23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 GPD1P21695 349 aa23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 SPRED3Q2MJR0 410 aa23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 ZNF467Q7Z7K2 595 aaPredicted RBP23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 NAT8LQ8N9F0 302 aa23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 TGS1Q96RS0 853 aaKnown RBP23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 C16orf70Q9BSU1 422 aa23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 SLC40A1Q9NP59 571 aa23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 CLEC11AQ9Y240 323 aa23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 SLC45A1Q9Y2W3 748 aa23.33■■□□□ 1.32
NKX2-1-201ENST00000354822 FOXO6A8MYZ6 492 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 POC1B-GALNT4F8VUJ3 575 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 MCF2LO15068 1137 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 STRNO43815 780 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 STIP1P31948 543 aaKnown RBP23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 NDST1P52848 882 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 FASTKD3Q14CZ7 662 aaKnown RBP23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 APBB1IPQ7Z5R6 666 aaPredicted RBP23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 ZNF410Q86VK4 478 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 GBP7Q8N8V2 638 aaPredicted RBP23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 GDAP1Q8TB36 358 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 CPT1BQ92523 772 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 KLC4Q9NSK0 619 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 PLXNA1Q9UIW2 1896 aa23.32■■□□□ 1.32
NKX2-1-201ENST00000354822 H3BRB1 525 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 TSPAN1O60635 241 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 ENDOD1O94919 500 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 ADORA2AP29274 412 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 RPL22P35268 128 aaKnown RBP23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 EIF3EP60228 445 aaKnown RBP23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 GJC2Q5T442 439 aaPredicted RBP23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 MAP1SQ66K74 1059 aaPredicted RBP23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 PYROXD1Q8WU10 500 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 HSPH1Q92598 858 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 TUT1Q9H6E5 874 aaKnown RBP23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 SLC12A4Q9UP95 1085 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 PDHXO00330 501 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 CD48P09326 243 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 TSHRP16473 764 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 GRM5P41594 1212 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 TFDP2Q14188 446 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 FAM47CQ5HY64 1035 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 ATP11CQ8NB49 1132 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 UBA3Q8TBC4 463 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 SMC6Q96SB8 1091 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 PPP1R16BQ96T49 567 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 ZNF408Q9H9D4 720 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 PLEKHA5Q9HAU0 1116 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 MLXIPLQ9NP71 852 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 PSMC3IPQ9P2W1 217 aaPredicted RBP23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 ARL2BPQ9Y2Y0 163 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 DERAQ9Y315 318 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 PLXNB2O15031 1838 aa23.31■■□□□ 1.32
NKX2-1-201ENST00000354822 C2CD4BA6NLJ0 364 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 E7ESA3 106 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 KRT15P19012 456 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 GDF10P55107 478 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 DCAF4L1Q3SXM0 396 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 SPATA21Q7Z572 469 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 CALN1Q9BXU9 219 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 TRABDQ9H4I3 376 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 ZMYND8Q9ULU4 1186 aaPredicted RBP23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 UTRNP46939 3433 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 ATP2C2O75185 946 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 PDGFRAP16234 1089 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 GEMIN4P57678 1058 aaKnown RBP23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 EFHC2Q5JST6 749 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 MAP7D3Q8IWC1 876 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 NCAPGQ9BPX3 1015 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 CDKN2AIPQ9NXV6 580 aaPredicted RBP23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 TSPAN16Q9UKR8 245 aa23.3■■□□□ 1.32
NKX2-1-201ENST00000354822 ITGBL1O95965 494 aaPredicted RBP23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 ZNF286BP0CG31 522 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 RBP3P10745 1247 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 GTF2A2P52657 109 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 SNX16P57768 344 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 ZC3H12AQ5D1E8 599 aaKnown RBP23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 HP1BP3Q5SSJ5 553 aaPredicted RBP23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 OR6B2Q6IFH4 312 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 PDIK1LQ8N165 341 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 SPATA18Q8TC71 538 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 RXFP2Q8WXD0 754 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 KIF12Q96FN5 646 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 MS4A4AQ96JQ5 239 aa23.29■■□□□ 1.32
NKX2-1-201ENST00000354822 CDC42EP1Q00587 391 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 SPARCL1Q14515 664 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 GPR162Q16538 588 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 BOLA3Q53S33 107 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 DPH6Q7L8W6 267 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 UNC45BQ8IWX7 931 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 FUKQ8N0W3 1084 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 DENND1AQ8TEH3 1009 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 SSU72Q9NP77 194 aaKnown RBP23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 CCL15-CCL14A0A0B4J2E2 113 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 BTBD19C9JJ37 291 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 GOLGA8MH3BSY2 632 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 PRPSAP2O60256 369 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 ASMTLO95671 621 aa23.28■■□□□ 1.32
NKX2-1-201ENST00000354822 SETSIPP0DME0 302 aa23.28■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 9.5 ms