RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 GPX6P59796 221 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 FNBP1LQ5T0N5 605 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 SH3PXD2AQ5TCZ1 1133 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 SHCBP1Q8NEM2 672 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 PEBP4Q96S96 227 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 FOXN2P32314 431 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 ARL4CP56559 192 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 EIF3EP60228 445 aaKnown RBP22.82■■□□□ 1.24
SHMT1-202ENST00000352886 MSS51Q4VC12 460 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 FAM71DQ8N9W8 422 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 YY1AP1Q9H869 796 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 DPP3Q9NY33 737 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 ITGA11Q9UKX5 1188 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 CLUHO75153 1309 aa22.82■■□□□ 1.24
SHMT1-202ENST00000352886 TAC1P20366 129 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 ZNF143P52747 638 aaPredicted RBP22.81■■□□□ 1.24
SHMT1-202ENST00000352886 INCA1Q0VD86 236 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 MAMDC4Q6UXC1 1216 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 C4orf33Q8N1A6 199 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 PPTC7Q8NI37 304 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 PYROXD1Q8WU10 500 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 ACAP3Q96P50 834 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 SMC6Q96SB8 1091 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 ADAM33Q9BZ11 813 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 ARL2BPQ9Y2Y0 163 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 PCNTO95613 3336 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 KAT6AQ92794 2004 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 TCRBV7S3A2A0A539 114 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 MCF2LO15068 1137 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 UBOX5O94941 541 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 RBP3P10745 1247 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 CYP3A5P20815 502 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 SSTR1P30872 391 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 RDXP35241 583 aaKnown RBP22.81■■□□□ 1.24
SHMT1-202ENST00000352886 PCK1P35558 622 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 MMRN1Q13201 1228 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 MTM1Q13496 603 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 CGB2Q6NT52 195 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 TRNP1Q6NT89 227 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 MTHFD1LQ6UB35 978 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 SPATA18Q8TC71 538 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 PIWIL1Q96J94 861 aaKnown RBP22.81■■□□□ 1.24
SHMT1-202ENST00000352886 RSAD1Q9HA92 442 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 SLC24A2Q9UI40 661 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 TSPAN16Q9UKR8 245 aa22.81■■□□□ 1.24
SHMT1-202ENST00000352886 E5RJQ4 531 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 PRPF4O43172 522 aaKnown RBP eCLIP22.8■■□□□ 1.24
SHMT1-202ENST00000352886 TSPAN1O60635 241 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 ASMTLO95671 621 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 GPD1P21695 349 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 GJA5P36382 358 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 RBP5P82980 135 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 KYAT1Q16773 422 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 RAB6CQ53S08 254 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 OR6B2Q6IFH4 312 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 RAB6CQ9H0N0 254 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 STAU2Q9NUL3 570 aaKnown RBP eCLIP22.8■■□□□ 1.24
SHMT1-202ENST00000352886 PSMC3IPQ9P2W1 217 aaPredicted RBP22.8■■□□□ 1.24
SHMT1-202ENST00000352886 C2CD2Q9Y426 696 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 PLXNB2O15031 1838 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 ADCYAP1R1P41586 468 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 CDH6P55285 790 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 C15orf59Q2T9L4 293 aaPredicted RBP22.8■■□□□ 1.24
SHMT1-202ENST00000352886 FAM183BPQ6ZVS7 135 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 C12orf29Q8N999 325 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 C16orf70Q9BSU1 422 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 CNPY3Q9BT09 278 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 PPCSQ9HAB8 311 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 SENP1Q9P0U3 644 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 RABGEF1Q9UJ41 708 aa22.8■■□□□ 1.24
SHMT1-202ENST00000352886 C2CD4BA6NLJ0 364 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 GRAP2O75791 330 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 TMEM63AO94886 807 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 PDGFRAP16234 1089 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 ADORA2AP29274 412 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 NRLP54845 237 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 GEMIN4P57678 1058 aaKnown RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 BASP1P80723 227 aaKnown RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 EFTUD2Q15029 972 aaKnown RBP eCLIP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 MTFR1Q15390 333 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 CDO1Q16878 200 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 ZNF792Q3KQV3 632 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 EFHC2Q5JST6 749 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 PARP9Q8IXQ6 854 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 ATP11CQ8NB49 1132 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 DENND1AQ8TEH3 1009 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 RXFP2Q8WXD0 754 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 KIF12Q96FN5 646 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 WDR83Q9BRX9 315 aaKnown RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 NT5C1AQ9BXI3 368 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 MAK16Q9BXY0 300 aaKnown RBP22.79■■□□□ 1.24
SHMT1-202ENST00000352886 PITPNM3Q9BZ71 974 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 PHACTR1Q9C0D0 580 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 PRKAG3Q9UGI9 489 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 SCN1AP35498 2009 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 COL1A2P08123 1366 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 PHBP35232 272 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 LCLAT1Q6UWP7 414 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 NPNTQ6UXI9 565 aa22.79■■□□□ 1.24
SHMT1-202ENST00000352886 FAM47EQ6ZV65 393 aa22.79■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms