RNA–Protein interactions for RNA: ENST00000345734.7

ATG4A-202, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 1 (best) BASIC

Gene ATG4A, Length 2,129 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-202ENST00000345734 PTPN11Q06124 597 aaPredicted RBP9.76□□□□□ -0.85
ATG4A-202ENST00000345734 ZBTB6Q15916 424 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 FAM228AQ86W67 206 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 IFT20Q8IY31 132 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 NME8Q8N427 588 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 TMEM176AQ96HP8 235 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 UBXN6Q9BZV1 441 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 UPF3AQ9H1J1 476 aaKnown RBP9.76□□□□□ -0.85
ATG4A-202ENST00000345734 CYP3A43Q9HB55 503 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 MRPL47Q9HD33 250 aaKnown RBP9.76□□□□□ -0.85
ATG4A-202ENST00000345734 PARVAQ9NVD7 372 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 RNF186Q9NXI6 227 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 GTF2IRD1Q9UHL9 959 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 NFU1Q9UMS0 254 aa9.76□□□□□ -0.85
ATG4A-202ENST00000345734 TCRBV5S1A1TA0A578 114 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 A6NHS1 94 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 TTI1O43156 1089 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 KPNA6O60684 536 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 ADAMTS4O75173 837 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 PROSCO94903 275 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 RECKO95980 971 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 CALB1P05937 261 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 CTSHP09668 335 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 RARBP10826 455 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 NDST1P52848 882 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 RWDD2BP57060 319 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 TAS2R40P59535 323 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 MMRN1Q13201 1228 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 SMC1AQ14683 1233 aaKnown RBP9.75□□□□□ -0.85
ATG4A-202ENST00000345734 PTPN20Q4JDL3 420 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 FAM47CQ5HY64 1035 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 SEL1L2Q5TEA6 688 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 DPH6Q7L8W6 267 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 ERICH1Q86X53 443 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 CYP4X1Q8N118 509 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 ARRDC4Q8NCT1 418 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 FEZF2Q8TBJ5 459 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 HPS1Q92902 700 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 FAXDC2Q96IV6 333 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 HEXIM2Q96MH2 286 aaKnown RBP9.75□□□□□ -0.85
ATG4A-202ENST00000345734 NAP1L3Q99457 506 aaPredicted RBP9.75□□□□□ -0.85
ATG4A-202ENST00000345734 ZNF518BQ9C0D4 1074 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 CNTN3Q9P232 1028 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 PARP2Q9UGN5 583 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 DERAQ9Y315 318 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 CDY2AQ9Y6F7 541 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 SCINQ9Y6U3 715 aa9.75□□□□□ -0.85
ATG4A-202ENST00000345734 H3BQF6 201 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MICAL2O94851 1124 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 FAM153BP0C7A2 387 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 TCF3P15923 654 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 CYP3A5P20815 502 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SLC1A1P43005 524 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SSR1P43307 286 aaKnown RBP9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MRPS6P82932 125 aaKnown RBP9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SP3Q02447 781 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 INCA1Q0VD86 236 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 NOGQ13253 232 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 TEAD4Q15561 434 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 FAM153CQ494X1 144 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 PPP1R2P3Q6NXS1 205 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 TAF2Q6P1X5 1199 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 DNAJC24Q6P3W2 148 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 DDX42Q86XP3 938 aaKnown RBP eCLIP9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SLC13A5Q86YT5 568 aaPredicted RBP9.74□□□□□ -0.85
ATG4A-202ENST00000345734 PRELID2Q8N945 189 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SMG8Q8ND04 991 aaKnown RBP9.74□□□□□ -0.85
ATG4A-202ENST00000345734 BEST2Q8NFU1 509 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 CAPNS2Q96L46 248 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MCEEQ96PE7 176 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MRPL45Q9BRJ2 306 aaKnown RBP9.74□□□□□ -0.85
ATG4A-202ENST00000345734 LHX5Q9H2C1 402 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SLITRK6Q9H5Y7 841 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SPC25Q9HBM1 224 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 XPNPEP3Q9NQH7 507 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 FAM153AQ9UHL3 310 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 BARX2Q9UMQ3 279 aaPredicted RBP9.74□□□□□ -0.85
ATG4A-202ENST00000345734 IPPQ9Y573 584 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 NME7Q9Y5B8 376 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SNX9Q9Y5X1 595 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 GOLGA6L10A0A0M3HER8 536 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SMIM28A0A1B0GU29 152 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 TMEM191CA6NGB0 347 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 M0QYV0 167 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MED7O43513 233 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 TCF4P15884 667 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 OGDHQ02218 1023 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 ZNF252P-AS1Q0IIN9 211 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MYO1EQ12965 1108 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 KCNA10Q16322 511 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 C9orf57Q5W0N0 161 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 SESTD1Q86VW0 696 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 C12orf29Q8N999 325 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 UBA3Q8TBC4 463 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 EDEM1Q92611 657 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 MYO19Q96H55 970 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 CPXM1Q96SM3 734 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 HERPUD2Q9BSE4 406 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 TRIM51Q9BSJ1 452 aa9.74□□□□□ -0.85
ATG4A-202ENST00000345734 OSBPL7Q9BZF2 842 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms