RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 CENPUQ71F23 418 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 FAM71DQ8N9W8 422 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 SLC10A4Q96EP9 437 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 MYCBPQ99417 103 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 KDM4CQ9H3R0 1056 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 ACTR5Q9H9F9 607 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 EFR3BQ9Y2G0 817 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 PDHXO00330 501 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 ALOX15BO15296 676 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 SNAI1O95863 264 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 RPL22P35268 128 aaKnown RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 PKN2Q16513 984 aaKnown RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 TAZQ16635 292 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 HIF1AQ16665 826 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 CCDC142Q17RM4 750 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 OR6B2Q6IFH4 312 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 CEP128Q6ZU80 1094 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 USP50Q70EL3 339 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 CMASQ8NFW8 434 aaPredicted RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 TTC25Q96NG3 672 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 TGS1Q96RS0 853 aaKnown RBP20.29■□□□□ 0.84
COL9A3-201ENST00000343916 ABCF3Q9NUQ8 709 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 PLXNA1Q9UIW2 1896 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 CITO14578 2027 aa20.29■□□□□ 0.84
COL9A3-201ENST00000343916 LOC102724159A0A0B4J2E5 919 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 A0A1B0GUA9 196 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 PPEF2O14830 753 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 PWP2Q15269 919 aaKnown RBP20.28■□□□□ 0.84
COL9A3-201ENST00000343916 GRIK4Q16099 956 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 LACTB2Q53H82 288 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-201ENST00000343916 SYCP2LQ5T4T6 812 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 FAM183BPQ6ZVS7 135 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 PAIP2Q9BPZ3 127 aaKnown RBP20.28■□□□□ 0.84
COL9A3-201ENST00000343916 KATNBL1Q9H079 304 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 VTA1Q9NP79 307 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 KLC4Q9NSK0 619 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 STAU2Q9NUL3 570 aaKnown RBP eCLIP20.28■□□□□ 0.84
COL9A3-201ENST00000343916 NKIRAS1Q9NYS0 192 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 SCN1AP35498 2009 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 PFKMP08237 780 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 SSTR1P30872 391 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 GPX6P59796 221 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 EIF3EP60228 445 aaKnown RBP20.28■□□□□ 0.84
COL9A3-201ENST00000343916 RBP5P82980 135 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 INCA1Q0VD86 236 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 ARHGEF18Q6ZSZ5 1173 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 TRABD2AQ86V40 505 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 ZC3H18Q86VM9 953 aaKnown RBP20.28■□□□□ 0.84
COL9A3-201ENST00000343916 TTC13Q8NBP0 860 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 SPATA18Q8TC71 538 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 RXFP2Q8WXD0 754 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 FAXDC2Q96IV6 333 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 SLC40A1Q9NP59 571 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 HAUS2Q9NVX0 235 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 ITGA11Q9UKX5 1188 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 PNMA3Q9UL41 463 aa20.28■□□□□ 0.84
COL9A3-201ENST00000343916 PDGFRAP16234 1089 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 ZNF143P52747 638 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-201ENST00000343916 CDH6P55285 790 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 CCNA1P78396 465 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 ATP11AP98196 1134 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 EFTUD2Q15029 972 aaKnown RBP eCLIP20.27■□□□□ 0.843e-7■■■■■ 29.5
COL9A3-201ENST00000343916 LDLRAD1Q5T700 205 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 DPY19L2Q6NUT2 758 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 CYP4V2Q6ZWL3 525 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-201ENST00000343916 C4orf33Q8N1A6 199 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 WDR83Q9BRX9 315 aaKnown RBP20.27■□□□□ 0.84
COL9A3-201ENST00000343916 NT5C1AQ9BXI3 368 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 ASNSD1Q9NWL6 643 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 C2CD2Q9Y426 696 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 HES2Q9Y543 173 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 ZSWIM8A7E2V4 1837 aa20.27■□□□□ 0.84
COL9A3-201ENST00000343916 APOC4-APOC2K7ER74 178 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 APOC2P02655 101 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 RBP3P10745 1247 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 SMPD1P17405 629 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 KRT15P19012 456 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 WDR4P57081 412 aaKnown RBP20.27■□□□□ 0.83
COL9A3-201ENST00000343916 FAM133BQ5BKY9 247 aaKnown RBP20.27■□□□□ 0.83
COL9A3-201ENST00000343916 PPP1R26Q5T8A7 1209 aaPredicted RBP20.27■□□□□ 0.83
COL9A3-201ENST00000343916 TRPM8Q7Z2W7 1104 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 PPIL6Q8IXY8 311 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 NAT8LQ8N9F0 302 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 ZMAT2Q96NC0 199 aaKnown RBP20.27■□□□□ 0.83
COL9A3-201ENST00000343916 FAM49BQ9NUQ9 324 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 SETD4Q9NVD3 440 aa20.27■□□□□ 0.83
COL9A3-201ENST00000343916 CLUHO75153 1309 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 KAT6AQ92794 2004 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 C2CD4BA6NLJ0 364 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 TMEM63AO94886 807 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 OAS1P00973 400 aaKnown RBP20.26■□□□□ 0.83
COL9A3-201ENST00000343916 GPD1P21695 349 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 BASP1P80723 227 aaKnown RBP20.26■□□□□ 0.83
COL9A3-201ENST00000343916 GLRA4Q5JXX5 417 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 RIBC1Q8N443 379 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-201ENST00000343916 ZC3H15Q8WU90 426 aaKnown RBP20.26■□□□□ 0.83
COL9A3-201ENST00000343916 MRPL45Q9BRJ2 306 aaKnown RBP20.26■□□□□ 0.83
COL9A3-201ENST00000343916 FAM49AQ9H0Q0 323 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-201ENST00000343916 SNX9Q9Y5X1 595 aa20.26■□□□□ 0.83
COL9A3-201ENST00000343916 ACTL7BQ9Y614 415 aa20.26■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms