RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 SPDYE1Q8NFV5 336 aaPredicted RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 UHMK1Q8TAS1 419 aaKnown RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 MGARPQ8TDB4 240 aa10.6□□□□□ -0.71
USP54-201ENST00000339859 ALKBH8Q96BT7 664 aaKnown RBP10.6□□□□□ -0.71
USP54-201ENST00000339859 PAPPAQ13219 1627 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 F8VZ95 297 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 ZNF500O60304 480 aaPredicted RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 DNAJC6O75061 913 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 DHX34Q14147 1143 aaKnown RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 C6orf118Q5T5N4 469 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 FAM172AQ8WUF8 416 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 TATDN2Q93075 761 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 RIPOR3Q96MK2 946 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 RILPQ96NA2 401 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 NDFIP2Q9NV92 336 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 ZNF510Q9Y2H8 683 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 ATP2C2O75185 946 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 ZNF200P98182 395 aaPredicted RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 TRIM59Q8IWR1 403 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 TFB1MQ8WVM0 346 aaKnown RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 NCKAP1Q9Y2A7 1128 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 USP20Q9Y2K6 914 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 ATP8A1Q9Y2Q0 1164 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 ACRP10323 421 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 GZMAP12544 262 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 NSUN2Q08J23 767 aaKnown RBP eCLIP10.59□□□□□ -0.71
USP54-201ENST00000339859 ATL2Q8NHH9 583 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 SH3KBP1Q96B97 665 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 HINFPQ9BQA5 517 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 CNPY3Q9BT09 278 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.59□□□□□ -0.71
USP54-201ENST00000339859 DNMT3LQ9UJW3 386 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 CHEK2O96017 543 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 PURAQ00577 322 aaKnown RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 MCL1Q07820 350 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 ZNF268Q14587 947 aaPredicted RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 HECTD3Q5T447 861 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 C17orf99Q6UX52 265 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 DSG4Q86SJ6 1040 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 SLC9A9Q8IVB4 645 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 CEP120Q8N960 986 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 SKA1Q96BD8 255 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 FOPNLQ96NB1 174 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 NXF3Q9H4D5 531 aaKnown RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 STN1Q9H668 368 aaKnown RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 ANXA9O76027 345 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 MBTD1Q05BQ5 628 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 C1QBPQ07021 282 aaKnown RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 IL17AQ16552 155 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 C9orf57Q5W0N0 161 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 RBM23Q86U06 439 aaKnown RBP10.59□□□□□ -0.71
USP54-201ENST00000339859 MCUQ8NE86 351 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 BHMTQ93088 406 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 MYLPFQ96A32 169 aa10.59□□□□□ -0.71
USP54-201ENST00000339859 A0A087X0B3 334 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 SYN3O14994 580 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 KRT37O76014 449 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 AKT1P31749 480 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 ATP5C1P36542 298 aaKnown RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 DHX9Q08211 1270 aaKnown RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 TRIM60Q495X7 471 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 FIGNQ5HY92 759 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 CCDC137Q6PK04 289 aaKnown RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 SYNDIG1Q9H7V2 258 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 PKP3Q9Y446 797 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 SLC30A1Q9Y6M5 507 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 ZNF536O15090 1300 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 CFAP99D6REC4 459 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 RNF40O75150 1001 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 CYP2C18P33260 490 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 ARL4DP49703 201 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 GEMP55040 296 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 JAG1P78504 1218 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 GDF6Q6KF10 455 aaPredicted RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 LINC00523Q86TU6 105 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 MYRIPQ8NFW9 859 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 CIPCQ9C0C6 399 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 DRC3Q9H069 523 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 PDZD7Q9H5P4 517 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 DHX33Q9H6R0 707 aaKnown RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 HACD3Q9P035 362 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 UBA6A0AVT1 1052 aaPredicted RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 ATMINO43313 823 aaPredicted RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 NCK2O43639 380 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 ARSEP51690 589 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 CENPCQ03188 943 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 CCDC6Q16204 474 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 ARNTL2Q8WYA1 636 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 PAK5Q9P286 719 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 INSL6Q9Y581 213 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 C22orf31O95567 290 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 TNFSF9P41273 254 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 BMT2Q1RMZ1 405 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 SLC47A2Q86VL8 602 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 NUP93Q8N1F7 819 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 OR6P1Q8NGX9 317 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 GPR63Q9BZJ6 419 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 SMYD3Q9H7B4 428 aa10.58□□□□□ -0.72
USP54-201ENST00000339859 SARS2Q9NP81 518 aaKnown RBP10.58□□□□□ -0.72
USP54-201ENST00000339859 KRT38O76015 456 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms