RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 ABCB6Q9NP58 842 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 RSPH14Q9UHP6 348 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ZMYM5Q9UJ78 669 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PADI3Q9ULW8 664 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 POC1B-GALNT4F8VUJ3 575 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SUN1O94901 812 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 LRG1P02750 347 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 AVPR1AP37288 418 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ST8SIA6P61647 398 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 GPS1Q13098 491 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 TARBP2Q15633 366 aaKnown RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 MIIPQ5JXC2 388 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF513Q8N8E2 541 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 LRRC8CQ8TDW0 803 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CREBZFQ9NS37 354 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PI4K2BG5E9Z4 385 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 XYLBO75191 536 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 EOMESO95936 686 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 MXRA7P84157 204 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 GOLGA7BQ2TAP0 167 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 ZNF792Q3KQV3 632 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 LCLAT1Q6UWP7 414 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CCNI2Q6ZMN8 369 aaPredicted RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PIGZQ86VD9 579 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 CCDC13Q8IYE1 715 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 GLIS3Q8NEA6 775 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 PURBQ96QR8 312 aaKnown RBP7.17□□□□□ -1.26
SF3B1-201ENST00000335508 SLC9A7Q96T83 725 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 LHX5Q9H2C1 402 aa7.17□□□□□ -1.26
SF3B1-201ENST00000335508 USP27XA6NNY8 438 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 M0QYT0 321 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 CREB3O43889 395 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 GMNNO75496 209 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 TYMPP19971 482 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 TFDP3Q5H9I0 405 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 PHLDB3Q6NSJ2 640 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 BBS12Q6ZW61 710 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 HELQQ8TDG4 1101 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 HSPH1Q92598 858 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 WNT8BQ93098 351 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 EMID1Q96A84 441 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SEPT5Q99719 369 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ISCUQ9H1K1 167 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SAYSD1Q9NPB0 183 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 RAB6BQ9NRW1 208 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 COL18A1P39060 1754 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 CABIN1Q9Y6J0 2220 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SOCS7O14512 581 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 PPP1R37O75864 691 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 TKTL1P51854 596 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 TTC23LQ6PF05 361 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 LINC00523Q86TU6 105 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 PSTKQ8IV42 348 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SRRM1Q8IYB3 904 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 POP1Q99575 1024 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ROPN1BQ9BZX4 212 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 HIPK3Q9H422 1215 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ROPN1Q9HAT0 212 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 STYXL1Q9Y6J8 313 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 COL22A1Q8NFW1 1626 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 A0A087WUV0 522 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SLC9A3R1O14745 358 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SGPL1O95470 568 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 PLEKP08567 350 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 YBX3P16989 372 aaKnown RBP eCLIP7.16□□□□□ -1.261e-7■■□□□ 13.2
SF3B1-201ENST00000335508 LAG3P18627 525 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SCNN1AP37088 669 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SERPINB9P50453 376 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 EPHB3P54753 998 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 KLC3Q6P597 504 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 CTU1Q7Z7A3 348 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 RYBPQ8N488 228 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ATPAF2Q8N5M1 289 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SLC7A14Q8TBB6 771 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ASIC4Q96FT7 647 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SGSM3Q96HU1 749 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 EEF2KO00418 725 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ADH1AP07327 375 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 LCP1P13796 627 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 PTPN1P18031 435 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 YWHAQP27348 245 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SLC6A3Q01959 620 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 FAM171A1Q5VUB5 890 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 NOP9Q86U38 636 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 OR6P1Q8NGX9 317 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SLC2A14Q8TDB8 520 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 LRRC39Q96DD0 335 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 CAPS2Q9BXY5 557 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 SH3BP1Q9Y3L3 701 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ZSCAN5CA6NGD5 496 aaPredicted RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 CRCPO75575 148 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 LUC7L3O95232 432 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 NPR3P17342 541 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 NR1D1P20393 614 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 RENBPP51606 427 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 ARSEP51690 589 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 DRG2P55039 364 aaKnown RBP7.16□□□□□ -1.26
SF3B1-201ENST00000335508 NOMO3P69849 1222 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 MAP7Q14244 749 aa7.16□□□□□ -1.26
SF3B1-201ENST00000335508 C10orf120Q5SQS8 335 aa7.16□□□□□ -1.26
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms