RNA–Protein interactions for RNA: ENST00000322213.8

SMC1A-201, Transcript of structural maintenance of chromosomes 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC1A, Length 9,784 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-201ENST00000322213 NBNO60934 754 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 MED26O95402 600 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 P4HBP07237 508 aaKnown RBP7.32□□□□□ -1.24
SMC1A-201ENST00000322213 UQCRBP14927 111 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 TFAMQ00059 246 aaKnown RBP7.32□□□□□ -1.24
SMC1A-201ENST00000322213 MAPK6Q16659 721 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 ARMC4Q5T2S8 1044 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 TMEM35BQ8NCS4 154 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 ZNF556Q9HAH1 456 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 GRIN2DO15399 1336 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 ZBTB5O15062 677 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 PRKAB2O43741 272 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 SNX2O60749 519 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 RALAP11233 206 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 CHRNDQ07001 517 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 MYBPC3Q14896 1274 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 ZNF618Q5T7W0 954 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 ZNF572Q7Z3I7 529 aaPredicted RBP7.32□□□□□ -1.24
SMC1A-201ENST00000322213 OR8H2Q8N162 312 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 ZCCHC7Q8N3Z6 543 aaKnown RBP7.32□□□□□ -1.24
SMC1A-201ENST00000322213 PTPRN2Q92932 1015 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 PPP1R2P1Q96PQ5 205 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 PAFAH2Q99487 392 aa7.32□□□□□ -1.24
SMC1A-201ENST00000322213 XDHP47989 1333 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 C15orf38-AP3S2A0A0A6YYH1 394 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 DNM1LO00429 736 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 BTN3A3O00478 584 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PDK4Q16654 411 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 UGP2Q16851 508 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 CDO1Q16878 200 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ZNF699Q32M78 642 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ARPINQ7Z6K5 226 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 SKA2Q8WVK7 121 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PHF21AQ96BD5 680 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 NOL6Q9H6R4 1146 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MBD2Q9UBB5 411 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PCDHA6Q9UN73 950 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 KLHL20Q9Y2M5 609 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 IPPQ9Y573 584 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PCDHA8Q9Y5H6 950 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PDE9AO76083 593 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 GYG1P46976 350 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MFSD5Q6N075 450 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ELMSAN1Q6PJG2 1045 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 CLVS1Q8IUQ0 354 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MED10Q9BTT4 135 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ZC3H12CQ9C0D7 883 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 THRAP3Q9Y2W1 955 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 TRMUO75648 421 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 TFRCP02786 760 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 DPYSQ14117 519 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 CCDC142Q17RM4 750 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 RSBN1Q5VWQ0 802 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MICU2Q8IYU8 434 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ZCCHC9Q8N567 271 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MTMR8Q96EF0 704 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 QKIQ96PU8 341 aaKnown RBP eCLIP7.31□□□□□ -1.241e-6■■■■□ 26.1
SMC1A-201ENST00000322213 SEMA4AQ9H3S1 761 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 CLK4Q9HAZ1 481 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 TMEM247A6NEH6 219 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 POLBP06746 335 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ALDH1A3P47895 512 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 FOLH1Q04609 750 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MAPK11Q15759 364 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PPP6R3Q5H9R7 873 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 USP17L2Q6R6M4 530 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 WNK4Q96J92 1243 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MCEEQ96PE7 176 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PREBQ9HCU5 417 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 TRIM17Q9Y577 477 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 NFAT5O94916 1531 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 TESPA1A2RU30 521 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 CDCA2Q69YH5 1023 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 TTC30AQ86WT1 665 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PUS3Q9BZE2 481 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 KBTBD4Q9NVX7 518 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ZNF142P52746 1687 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 HEG1Q9ULI3 1381 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 USP17L3A6NCW0 530 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 USP17L4A6NCW7 530 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PDE2AO00408 941 aaPredicted RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 FCHO1O14526 889 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 SNAP91O60641 907 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 FXR2P51116 673 aaKnown RBP eCLIP7.31□□□□□ -1.247e-7■■■■□ 24.5
SMC1A-201ENST00000322213 JAK3P52333 1124 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 SNRPFP62306 86 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PDPK2PQ6A1A2 396 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 USP17L1Q7RTZ2 530 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 HEATR4Q86WZ0 1026 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 NDUFAF2Q8N183 169 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 C19orf18Q8NEA5 215 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 MOV10Q9HCE1 1003 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP7.31□□□□□ -1.246e-7■■■■□ 21.1
SMC1A-201ENST00000322213 PAK5Q9P286 719 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 RALGAPA1Q6GYQ0 2036 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 TDRD6O60522 2096 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 F8W8V4 182 aa7.31□□□□□ -1.24
SMC1A-201ENST00000322213 PHGDHO43175 533 aaKnown RBP7.31□□□□□ -1.24
SMC1A-201ENST00000322213 ZNF23P17027 643 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms