RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 OTOL1A6NHN0 477 aaPredicted RBP20.79■□□□□ 0.92
LIME1-201ENST00000309546 KIF20AO95235 890 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 ABL1P00519 1130 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 C4BPAP04003 597 aaKnown RBP20.79■□□□□ 0.92
LIME1-201ENST00000309546 TDGF1P13385 188 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 IFNAR2P48551 515 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 CACNA2D1P54289 1103 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 NRLP54845 237 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 CDH8P55286 799 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 CCINQ13939 588 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 PDGFRLQ15198 375 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 ZNF77Q15935 545 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 MAMSTRQ6ZN01 415 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 KRBA2Q6ZNG9 492 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 CEP295NLQ96MC4 621 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 MED10Q9BTT4 135 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 EPC1Q9H2F5 836 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 VRTNQ9H8Y1 702 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 EHD2Q9NZN4 543 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 TRPM5Q9NZQ8 1165 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 GCNT4Q9P109 453 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 MAPK8IP1Q9UQF2 711 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 WNT6Q9Y6F9 365 aa20.79■□□□□ 0.92
LIME1-201ENST00000309546 EP300Q09472 2414 aaPredicted RBP20.79■□□□□ 0.92
LIME1-201ENST00000309546 ATG2BQ96BY7 2078 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 MYH10P35580 1976 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 FAM237AA0A1B0GTK4 181 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 A0A1W2PQ27 194 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 A0A1W2PQ64 194 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 A0A1W2PQD8 194 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 RHOBTB3O94955 611 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 VNN1O95497 513 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 HDCP19113 662 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 CLDN10P78369 228 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 DPYDQ12882 1025 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 CPA6Q8N4T0 437 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 SH3RF2Q8TEC5 729 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 C8orf48Q96LL4 319 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 B3GNT5Q9BYG0 378 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 ATP8B3O60423 1300 aa20.78■□□□□ 0.92
LIME1-201ENST00000309546 OTOGLQ3ZCN5 2332 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 NR2F2P24468 414 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 PIK3CAP42336 1068 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 PDE6CP51160 858 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 AMPD2Q01433 879 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 DMWDQ09019 674 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 GRSF1Q12849 480 aaKnown RBP eCLIP20.77■□□□□ 0.926e-6■■■■□ 20.5
LIME1-201ENST00000309546 LPAL2Q16609 132 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 HEATR6Q6AI08 1181 aaKnown RBP20.77■□□□□ 0.92
LIME1-201ENST00000309546 FSTL4Q6MZW2 842 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 OSCP1Q8WVF1 389 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 CHFRQ96EP1 664 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 TTLL2Q9BWV7 592 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 SDCBP2Q9H190 292 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 ECT2Q9H8V3 914 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 TMEM30AQ9NV96 361 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 C2orf42Q9NWW7 574 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 TRAF3IP3Q9Y228 551 aa20.77■□□□□ 0.92
LIME1-201ENST00000309546 CHURC1-FNTBB4DL54 471 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 ZNF202O95125 648 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 P4HA1P13674 534 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 ID4P47928 161 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 FNTBP49356 437 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 NOP14P78316 857 aaKnown RBP20.76■□□□□ 0.91
LIME1-201ENST00000309546 TAF10Q12962 218 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 ZACNQ401N2 412 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 TMEM196Q5HYL7 178 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 PRR23BQ6ZRT6 265 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 SV2AQ7L0J3 742 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 FAM35AQ86V20 835 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 SYNPOQ8N3V7 929 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 TMC2Q8TDI7 906 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 TMEM174Q8WUU8 243 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 SECISBP2LQ93073 1101 aaKnown RBP20.76■□□□□ 0.91
LIME1-201ENST00000309546 ATP2A3Q93084 1043 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 TNIP3Q96KP6 325 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 SLITRK1Q96PX8 696 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 UTP3Q9NQZ2 479 aaKnown RBP eCLIP20.76■□□□□ 0.911e-6■■■■■ 94.7
LIME1-201ENST00000309546 RAB23Q9ULC3 237 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 ARHGAP26Q9UNA1 814 aa20.76■□□□□ 0.91
LIME1-201ENST00000309546 ZNF840PA6NDX5 716 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 TRDMT1O14717 391 aaKnown RBP20.75■□□□□ 0.91
LIME1-201ENST00000309546 TRIM49P0CI25 452 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 TRIM49CP0CI26 452 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 GJA4P35212 333 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 VAMP7P51809 220 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 ORC1Q13415 861 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 SGSM1Q2NKQ1 1148 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 NAIF1Q69YI7 327 aaPredicted RBP20.75■□□□□ 0.91
LIME1-201ENST00000309546 SPOPLQ6IQ16 392 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 PKN3Q6P5Z2 889 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 P2RY13Q9BPV8 354 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 MMRN2Q9H8L6 949 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 GMEB2Q9UKD1 530 aa20.75■□□□□ 0.91
LIME1-201ENST00000309546 K7ESF4 209 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 LEFTY2O00292 366 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 EGFP01133 1207 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 HLA-DRAP01903 254 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 PPP3CCP48454 512 aa20.74■□□□□ 0.91
LIME1-201ENST00000309546 EML3Q32P44 896 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms