RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 TRPM8Q7Z2W7 1104 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 TRABD2AQ86V40 505 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 CYP3A43Q9HB55 503 aa19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 STAU2Q9NUL3 570 aaKnown RBP eCLIP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 USP15Q9Y4E8 981 aaPredicted RBP19.24■□□□□ 0.67
SHKBP1-201ENST00000291842 PPEF2O14830 753 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 HMGCRP04035 888 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 PDGFRAP16234 1089 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 FOXN2P32314 431 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 EPHX2P34913 555 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 GABRB2P47870 512 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 WDR4P57081 412 aaKnown RBP19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 ATP11AP98196 1134 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 CCDC142Q17RM4 750 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 CMASQ8NFW8 434 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 SPATA18Q8TC71 538 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 RXFP2Q8WXD0 754 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 SLC10A4Q96EP9 437 aa19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 CDKN2AIPQ9NXV6 580 aaPredicted RBP19.23■□□□□ 0.67
SHKBP1-201ENST00000291842 CENPFP49454 3210 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 A0A1W2PPM1 405 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 RASSF9O75901 435 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 CDH6P55285 790 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 BASP1P80723 227 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 RBP5P82980 135 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 POU5F1BQ06416 359 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 TAZQ16635 292 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 MARCH8Q5T0T0 291 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM47EQ6ZV65 393 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 PPIL6Q8IXY8 311 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 SHCBP1Q8NEM2 672 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 TRABDQ9H4I3 376 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM49BQ9NUQ9 324 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 ASNSD1Q9NWL6 643 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 EFR3BQ9Y2G0 817 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 CLUHO75153 1309 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM47DPA6NHR8 397 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 OAS1P00973 400 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 PFKMP08237 780 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 RBP3P10745 1247 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 ZNF143P52747 638 aaPredicted RBP19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 GRIK4Q16099 956 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 IFNLR1Q8IU57 520 aaPredicted RBP19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 TTC13Q8NBP0 860 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 THOC1Q96FV9 657 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 LPIN3Q9BQK8 851 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 WDR83Q9BRX9 315 aaKnown RBP19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 VRTNQ9H8Y1 702 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 KLC4Q9NSK0 619 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 GPATCH2LQ9NWQ4 482 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP19.22■□□□□ 0.671e-8■■■■■ 45.1
SHKBP1-201ENST00000291842 HES2Q9Y543 173 aa19.22■□□□□ 0.67
SHKBP1-201ENST00000291842 APOC4-APOC2K7ER74 178 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 PDHXO00330 501 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 TMEM63AO94886 807 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 MAP3K6O95382 1288 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 APOC2P02655 101 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 GHRP10912 638 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 GPD1P21695 349 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 GSCP56915 257 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 GOLGA7BQ2TAP0 167 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 PPP1R26Q5T8A7 1209 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 SCYL2Q6P3W7 929 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 C1orf228Q6PIY5 440 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 ACOT1Q86TX2 421 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 NAT8LQ8N9F0 302 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 PYROXD1Q8WU10 500 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 LRRN4Q8WUT4 740 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 P3H4Q92791 437 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 MRPL45Q9BRJ2 306 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 NT5C1AQ9BXI3 368 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 ITGA11Q9UKX5 1188 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 A0A1B0GUA9 196 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 NPTXRO95502 500 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 SNAI1O95863 264 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 BBS9Q3SYG4 887 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 CGB2Q6NT52 195 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 CYP4V2Q6ZWL3 525 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 RIBC1Q8N443 379 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 FBXO36Q8NEA4 188 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 SPOCK2Q92563 424 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 MAGEB18Q96M61 343 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 MAK16Q9BXY0 300 aaKnown RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 FAM49AQ9H0Q0 323 aaPredicted RBP19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 SETD4Q9NVD3 440 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 SNTG2Q9NY99 539 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 SNX9Q9Y5X1 595 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 ACTL7BQ9Y614 415 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 TRIP11Q15643 1979 aa19.21■□□□□ 0.67
SHKBP1-201ENST00000291842 C2CD4BA6NLJ0 364 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 MCF2LO15068 1137 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 YBX3P16989 372 aaKnown RBP eCLIP19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 RPA3P35244 121 aaPredicted RBP19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 ARL4CP56559 192 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 INCA1Q0VD86 236 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 GLRA4Q5JXX5 417 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 PMF1Q6P1K2 205 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 PPP1R21Q6ZMI0 780 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 C3orf62Q6ZUJ4 267 aa19.2■□□□□ 0.66
SHKBP1-201ENST00000291842 SPATA21Q7Z572 469 aa19.2■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms