RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 SLC22A12Q96S37 553 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 MRPL45Q9BRJ2 306 aaKnown RBP10.39□□□□□ -0.75
VPS41-201ENST00000265745 XYLT2Q9H1B5 865 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 SNX25Q9H3E2 840 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 EBF3Q9H4W6 596 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 KIF9Q9HAQ2 790 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 HPS4Q9NQG7 708 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 GCNT4Q9P109 453 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 USP25Q9UHP3 1055 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 HPSEQ9Y251 543 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 NME7Q9Y5B8 376 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 WDR87Q6ZQQ6 2873 aa10.39□□□□□ -0.75
VPS41-201ENST00000265745 SPTBN4Q9H254 2564 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 SCN1AP35498 2009 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 MYH11P35749 1972 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 A0A1B0GVL5 298 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 TRDMT1O14717 391 aaKnown RBP10.38□□□□□ -0.75
VPS41-201ENST00000265745 PAPSS2O95340 614 aaPredicted RBP10.38□□□□□ -0.75
VPS41-201ENST00000265745 ARSAP15289 507 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 PFKFB1P16118 471 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 PTPN1P18031 435 aaKnown RBP10.38□□□□□ -0.75
VPS41-201ENST00000265745 ATICP31939 592 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 GRIK1P39086 918 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 ID4P47928 161 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 CASP4P49662 377 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 MYL6P60660 151 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 TNNC1P63316 161 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 CYP27A1Q02318 531 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 FAM160A1Q05DH4 1040 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 PSMD2Q13200 908 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 TRPC3Q13507 836 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 PDGFRLQ15198 375 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 KMT5BQ4FZB7 885 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 TRIM68Q6AZZ1 485 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 CC2D1AQ6P1N0 951 aaPredicted RBP10.38□□□□□ -0.75
VPS41-201ENST00000265745 Q6ZS52 159 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 PACS2Q86VP3 889 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 SLC9A9Q8IVB4 645 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 KIAA2013Q8IYS2 634 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 ARL14EPQ8N8R7 260 aaPredicted RBP10.38□□□□□ -0.75
VPS41-201ENST00000265745 FSIP1Q8NA03 581 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 KIAA0895Q8NCT3 520 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 OR6B3Q8NGW1 331 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 PARD3BQ8TEW8 1205 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 CHFRQ96EP1 664 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 HINFPQ9BQA5 517 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 KCTD10Q9H3F6 313 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 VRTNQ9H8Y1 702 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 C2orf42Q9NWW7 574 aa10.38□□□□□ -0.75
VPS41-201ENST00000265745 ZNF292O60281 2723 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 TRAV19A0A0A6YYK7 116 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 FAM237AA0A1B0GTK4 181 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 C2orf78A6NCI8 922 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 K7ESF4 209 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 PDXKO00764 312 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 AP1G2O75843 785 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 C4BPAP04003 597 aaKnown RBP10.37□□□□□ -0.75
VPS41-201ENST00000265745 MYL1P05976 194 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 USP17L7P0C7H9 530 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 HDCP19113 662 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 HOXA6P31267 233 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 AP3M2P53677 418 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 USP46P62068 366 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 KRT85P78386 507 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 FOXK2Q01167 660 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 ZNF77Q15935 545 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 TMEM196Q5HYL7 178 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 MDH1BQ5I0G3 518 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 TDRD10Q5VZ19 366 aaKnown RBP10.37□□□□□ -0.75
VPS41-201ENST00000265745 DENND5BQ6ZUT9 1274 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 OSCP1Q8WVF1 389 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 SYAP1Q96A49 352 aaPredicted RBP10.37□□□□□ -0.75
VPS41-201ENST00000265745 RMDN1Q96DB5 314 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 SPATA32Q96LK8 384 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 C8orf48Q96LL4 319 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 TTLL2Q9BWV7 592 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 DPEP3Q9H4B8 488 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 TRPC7Q9HCX4 862 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 EXOC1Q9NV70 894 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 NXF1Q9UBU9 619 aaKnown RBP10.37□□□□□ -0.75
VPS41-201ENST00000265745 SMG5Q9UPR3 1016 aaKnown RBP10.37□□□□□ -0.75
VPS41-201ENST00000265745 MYH15Q9Y2K3 1946 aa10.37□□□□□ -0.75
VPS41-201ENST00000265745 PDCD11Q14690 1871 aaKnown RBP10.36□□□□□ -0.75
VPS41-201ENST00000265745 ZNF840PA6NDX5 716 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 LRRIQ3A6PVS8 624 aaPredicted RBP10.36□□□□□ -0.75
VPS41-201ENST00000265745 A8MXQ7 604 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 F8VP50 259 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 SMAPO00193 183 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 HRO43593 1189 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 PHACTR2O75167 634 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 VNN1O95497 513 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 RPN1P04843 607 aaKnown RBP10.36□□□□□ -0.75
VPS41-201ENST00000265745 CKMP06732 381 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 PFKLP17858 780 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 TGM1P22735 817 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 ANXA13P27216 316 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 SYKP43405 635 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 GALK1P51570 392 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 NDUFA8P51970 172 aa10.36□□□□□ -0.75
VPS41-201ENST00000265745 CACNA2D1P54289 1103 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms