RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 BCAR1P56945 870 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 CUL3Q13618 768 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 PPP6R3Q5H9R7 873 aaPredicted RBP17.04■□□□□ 0.32
CTCF-201ENST00000264010 C2orf69Q8N8R5 385 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 PPCSQ9HAB8 311 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 ETAA1Q9NY74 926 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 ITGA11Q9UKX5 1188 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 DYNC1LI2O43237 492 aaPredicted RBP17.04■□□□□ 0.32
CTCF-201ENST00000264010 NPTXRO95502 500 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 RBP3P10745 1247 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 GTF2A2P52657 109 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 OTUD4Q01804 1114 aaKnown RBP17.04■□□□□ 0.32
CTCF-201ENST00000264010 FAM47CQ5HY64 1035 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 LRRC34Q8IZ02 419 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 KIF2BQ8N4N8 673 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 ACTL9Q8TC94 416 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 SLCO2A1Q92959 643 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 TMEM121Q9BTD3 319 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 MED10Q9BTT4 135 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 PCDH9Q9HC56 1237 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 BARX2Q9UMQ3 279 aaPredicted RBP17.04■□□□□ 0.32
CTCF-201ENST00000264010 HEY1Q9Y5J3 304 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 LIASO43766 372 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 GRIN3BO60391 1043 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 ANKMY2Q8IV38 441 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 TGS1Q96RS0 853 aaKnown RBP17.04■□□□□ 0.32
CTCF-201ENST00000264010 TMEM109Q9BVC6 243 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 FZD8Q9H461 694 aa17.04■□□□□ 0.32
CTCF-201ENST00000264010 DDX20Q9UHI6 824 aaKnown RBP17.04■□□□□ 0.32
CTCF-201ENST00000264010 MT-ND3P03897 115 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 CFHP08603 1231 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 CHKAP35790 457 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 CCNHP51946 323 aaPredicted RBP17.03■□□□□ 0.32
CTCF-201ENST00000264010 PPIL6Q8IXY8 311 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 SPATA18Q8TC71 538 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 ZC3H15Q8WU90 426 aaKnown RBP17.03■□□□□ 0.32
CTCF-201ENST00000264010 TLCD1Q96CP7 247 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 PITPNM3Q9BZ71 974 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 SMYD3Q9H7B4 428 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 DRG1Q9Y295 367 aaKnown RBP17.03■□□□□ 0.32
CTCF-201ENST00000264010 LOXHD1Q8IVV2 1947 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 SMAPO00193 183 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 PDHXO00330 501 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 MICAL2O94851 1124 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 TMEM62Q0P6H9 643 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 GOLGA7BQ2TAP0 167 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 Q3C1V9 767 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 CDCA2Q69YH5 1023 aaPredicted RBP17.03■□□□□ 0.32
CTCF-201ENST00000264010 ZCCHC9Q8N567 271 aaKnown RBP17.03■□□□□ 0.32
CTCF-201ENST00000264010 PPP1R14CQ8TAE6 165 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 PARK7Q99497 189 aaKnown RBP17.03■□□□□ 0.32
CTCF-201ENST00000264010 VCX3BQ9H321 246 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 VCX3AQ9NNX9 186 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 PCDHGC3Q9UN70 934 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 GRAP2O75791 330 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 HMGCRP04035 888 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 ERMARDQ5T6L9 678 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 C1orf228Q6PIY5 440 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 CNPY3Q9BT09 278 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 TRABDQ9H4I3 376 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 RMI1Q9H9A7 625 aa17.03■□□□□ 0.32
CTCF-201ENST00000264010 CHCHD3Q9NX63 227 aaKnown RBP17.03■□□□□ 0.32
CTCF-201ENST00000264010 TPD52L2O43399 206 aaKnown RBP17.02■□□□□ 0.32
CTCF-201ENST00000264010 TROVE2P10155 538 aaKnown RBP eCLIP17.02■□□□□ 0.32
CTCF-201ENST00000264010 CTCFP49711 727 aaPredicted RBP17.02■□□□□ 0.32
CTCF-201ENST00000264010 GRIK4Q16099 956 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 GJC2Q5T442 439 aaPredicted RBP17.02■□□□□ 0.32
CTCF-201ENST00000264010 ZNF560Q96MR9 790 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 KLC2Q9H0B6 622 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 LHX5Q9H2C1 402 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 GGA2Q9UJY4 613 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 SHOC2Q9UQ13 582 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 DCDC2CA8MYV0 355 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 ARL4AP40617 200 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 NDST1P52848 882 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 POLNQ7Z5Q5 900 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 NT5DC4Q86YG4 428 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 GBP7Q8N8V2 638 aaPredicted RBP17.02■□□□□ 0.32
CTCF-201ENST00000264010 STAMBPL1Q96FJ0 436 aa17.02■□□□□ 0.32
CTCF-201ENST00000264010 HUS1O60921 280 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 ADCYAP1R1P41586 468 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 WNT7BP56706 349 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 CNGA2Q16280 664 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 PDCD2Q16342 344 aaPredicted RBP17.02■□□□□ 0.31
CTCF-201ENST00000264010 KIZQ2M2Z5 673 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 HAPLN2Q9GZV7 340 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 RNPEPQ9H4A4 650 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 FAM49BQ9NUQ9 324 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 TXNDC16Q9P2K2 825 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 USP18Q9UMW8 372 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 SMG5Q9UPR3 1016 aaKnown RBP17.02■□□□□ 0.31
CTCF-201ENST00000264010 FAM47DPA6NHR8 397 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 CYP2C9P11712 490 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 MMP13P45452 471 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 ACAP1Q15027 740 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 BOLA3Q53S33 107 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 NOTUMQ6P988 496 aa17.02■□□□□ 0.31
CTCF-201ENST00000264010 FHDC1Q9C0D6 1143 aaPredicted RBP17.02■□□□□ 0.31
CTCF-201ENST00000264010 PAPOLBQ9NRJ5 636 aaKnown RBP17.02■□□□□ 0.31
CTCF-201ENST00000264010 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.02■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms