RNA–Protein interactions for RNA: ENST00000262396.10

TRAF4-202, Transcript of TNF receptor associated factor 4, humanhuman

TSL 1 (best) BASIC

Gene TRAF4, Length 683 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-202ENST00000262396 EXOC1Q9NV70 894 aa13.06□□□□□ -0.32
TRAF4-202ENST00000262396 CGNQ9P2M7 1197 aaKnown RBP13.06□□□□□ -0.32
TRAF4-202ENST00000262396 FANCMQ8IYD8 2048 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 OTOGLQ3ZCN5 2332 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 TSC2P49815 1807 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 F8VP50 259 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 SLC9A3R1O14745 358 aaPredicted RBP13.05□□□□□ -0.32
TRAF4-202ENST00000262396 RHOBTB1O94844 696 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 ZSCAN22P10073 491 aaPredicted RBP13.05□□□□□ -0.32
TRAF4-202ENST00000262396 MBL2P11226 248 aaPredicted RBP13.05□□□□□ -0.32
TRAF4-202ENST00000262396 PTPN1P18031 435 aaKnown RBP13.05□□□□□ -0.32
TRAF4-202ENST00000262396 HOXA6P31267 233 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 ATICP31939 592 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 DGKEP52429 567 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 SEC13P55735 322 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 CYP24A1Q07973 514 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 ZNF77Q15935 545 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 E2F4Q16254 413 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 ZNF699Q32M78 642 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 SHC4Q6S5L8 630 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 TSTD1Q8NFU3 115 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 KBTBD7Q8WVZ9 684 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 DDX1Q92499 740 aaKnown RBP13.05□□□□□ -0.32
TRAF4-202ENST00000262396 PCED1BQ96HM7 432 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 MRPL45Q9BRJ2 306 aaKnown RBP13.05□□□□□ -0.32
TRAF4-202ENST00000262396 CRTAC1Q9NQ79 661 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 C2orf42Q9NWW7 574 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 SMPD4Q9NXE4 827 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 ARHGAP26Q9UNA1 814 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 PTPRJQ12913 1337 aa13.05□□□□□ -0.32
TRAF4-202ENST00000262396 NUP210Q8TEM1 1887 aaPredicted RBP13.04□□□□□ -0.32
TRAF4-202ENST00000262396 CCDC163A0A0D9SF12 145 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 OTOL1A6NHN0 477 aaPredicted RBP13.04□□□□□ -0.32
TRAF4-202ENST00000262396 LEFTY2O00292 366 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 TACC1O75410 805 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 TADA3O75528 432 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 APBB3O95704 486 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 F13A1P00488 732 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 CST3P01034 146 aaPredicted RBP13.04□□□□□ -0.32
TRAF4-202ENST00000262396 PFKLP17858 780 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 AP3M2P53677 418 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 MYL6P60660 151 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 USP4Q13107 963 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 DMC1Q14565 340 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 CCDC6Q16204 474 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 KNOP1Q1ED39 458 aaKnown RBP13.04□□□□□ -0.32
TRAF4-202ENST00000262396 ZNF667Q5HYK9 610 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 PKN3Q6P5Z2 889 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 SCARA5Q6ZMJ2 495 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 DDX42Q86XP3 938 aaKnown RBP eCLIP13.04□□□□□ -0.323e-8■■■□□ 16.5
TRAF4-202ENST00000262396 PDZD8Q8NEN9 1154 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 CXorf38Q8TB03 319 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 SCFD1Q8WVM8 642 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 FBXO32Q969P5 355 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 LOXL4Q96JB6 756 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 CHAMP1Q96JM3 812 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 TNIP3Q96KP6 325 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 SLC22A12Q96S37 553 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 PKMYT1Q99640 499 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 DNAI2Q9GZS0 605 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 SH3BP1Q9Y3L3 701 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 CPQQ9Y646 472 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 GPR179Q6PRD1 2367 aa13.04□□□□□ -0.32
TRAF4-202ENST00000262396 ZNF292O60281 2723 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 PVALEFA0A1B0GWK0 134 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 SLC30A4O14863 429 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 ALDH1A2O94788 518 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 RTN3O95197 1032 aaPredicted RBP13.03□□□□□ -0.32
TRAF4-202ENST00000262396 KIF20AO95235 890 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 FAM163BP0C2L3 166 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 YWHAQP27348 245 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 CASP1P29466 404 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 TAF10Q12962 218 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 EML3Q32P44 896 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 USP39Q53GS9 565 aaKnown RBP13.03□□□□□ -0.32
TRAF4-202ENST00000262396 C2orf27AQ580R0 203 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 PPM1JQ5JR12 505 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 WDR44Q5JSH3 913 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 BTBD8Q5XKL5 378 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 SCARA3Q6AZY7 606 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 ATL3Q6DD88 541 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 NUDT18Q6ZVK8 323 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 FILIP1Q7Z7B0 1213 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 KBTBD6Q86V97 674 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 NUP93Q8N1F7 819 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 B3GALNT2Q8NCR0 500 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 C8orf48Q96LL4 319 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 LINC00597Q9H2U6 94 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 FBRSL1Q9HCM7 1045 aaKnown RBP13.03□□□□□ -0.32
TRAF4-202ENST00000262396 BCCIPQ9P287 314 aaKnown RBP eCLIP13.03□□□□□ -0.32
TRAF4-202ENST00000262396 CFAP97Q9P2B7 532 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 FRMD4BQ9Y2L6 1034 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 ANK1P16157 1881 aa13.03□□□□□ -0.32
TRAF4-202ENST00000262396 ZNF840PA6NDX5 716 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 CLDN5O00501 218 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 ZBTB24O43167 697 aaPredicted RBP13.02□□□□□ -0.33
TRAF4-202ENST00000262396 TGFB1I1O43294 461 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 AKAP3O75969 853 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 ADH1CP00326 375 aa13.02□□□□□ -0.33
TRAF4-202ENST00000262396 APODP05090 189 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms