RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 CDK5RAP2Q96SN8 1893 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 DMAP1Q9NPF5 467 aaPredicted RBP12.14□□□□□ -0.47
VPS4A-201ENST00000254950 CDH9Q9ULB4 789 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 PCDHB5Q9Y5E4 795 aa12.14□□□□□ -0.47
VPS4A-201ENST00000254950 CILPO75339 1184 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ALDH1A3P47895 512 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ADIGQ0VDE8 80 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 FGD4Q96M96 766 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ZIC5Q96T25 663 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 I3L4J1 428 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 CES2O00748 559 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 CAND2O75155 1236 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ZNF189O75820 626 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 CPP00450 1065 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 IRX5P78411 483 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 TRIM32Q13049 653 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 BYSLQ13895 437 aaKnown RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 JAMLQ86YT9 394 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ANKRD52Q8NB46 1076 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ACSF2Q96CM8 615 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 SNF8Q96H20 258 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 CFAP57Q96MR6 1250 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 DNAJC17Q9NVM6 304 aaKnown RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 AJAP1Q9UKB5 411 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 RASSF10A6NK89 507 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 PPP1R12AO14974 1030 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 EZRP15311 586 aaKnown RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 KCNJ1P48048 391 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 FNTAP49354 379 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ARSEP51690 589 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ARL4CP56559 192 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 SLC6A3Q01959 620 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 CRELD2Q6UXH1 353 aaPredicted RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 SCUBE3Q8IX30 993 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 MRPL45Q9BRJ2 306 aaKnown RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 TRIM51Q9BSJ1 452 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 GJD2Q9UKL4 321 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 USP18Q9UMW8 372 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 PCDHA3Q9Y5H8 950 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 PAPPA2Q9BXP8 1791 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 CFAP69A5D8W1 941 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 SIGLEC16A6NMB1 481 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ADCY6O43306 1168 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 RBP3P10745 1247 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 ZRSR2Q15696 482 aaKnown RBP12.13□□□□□ -0.47
VPS4A-201ENST00000254950 KCNT1Q5JUK3 1230 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 IZUMO3Q5VZ72 239 aa12.13□□□□□ -0.47
VPS4A-201ENST00000254950 GJB6O95452 261 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 EIF3BP55884 814 aaKnown RBP12.12□□□□□ -0.47
VPS4A-201ENST00000254950 COPS2P61201 443 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 YWHAZP63104 245 aaKnown RBP12.12□□□□□ -0.47
VPS4A-201ENST00000254950 MAMLD1Q13495 774 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 ACAP1Q15027 740 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 ZNF618Q5T7W0 954 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 MICALCLQ6ZW33 695 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 NECAB2Q7Z6G3 386 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 SPATA18Q8TC71 538 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 LHX5Q9H2C1 402 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 EEF2KO00418 725 aaKnown RBP12.12□□□□□ -0.47
VPS4A-201ENST00000254950 NPR3P17342 541 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 MX2P20592 715 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 MMP8P22894 467 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 COILP38432 576 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-201ENST00000254950 PDK2Q15119 407 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 TFDP3Q5H9I0 405 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 TMEM199Q8N511 208 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 STKLD1Q8NE28 680 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 PYROXD1Q8WU10 500 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 CDKL2Q92772 493 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 KAT2BQ92831 832 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 APBB2Q92870 758 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 FBXO32Q969P5 355 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 CDHR5Q9HBB8 845 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 TJP2Q9UDY2 1190 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 NOCTQ9UK39 431 aaKnown RBP12.12□□□□□ -0.47
VPS4A-201ENST00000254950 POLR2AP24928 1970 aaKnown RBP12.12□□□□□ -0.47
VPS4A-201ENST00000254950 CARNS1A5YM72 827 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 MYADML2A6NDP7 307 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 TTLL13PA6NNM8 815 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 POC1B-GALNT4F8VUJ3 575 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 CCNI2Q6ZMN8 369 aaPredicted RBP12.12□□□□□ -0.47
VPS4A-201ENST00000254950 SERINC5Q86VE9 423 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 VPS52Q8N1B4 723 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 C12orf29Q8N999 325 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 DBF4BQ8NFT6 615 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 ERP44Q9BS26 406 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 SAYSD1Q9NPB0 183 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 PCDHB12Q9Y5F1 795 aa12.12□□□□□ -0.47
VPS4A-201ENST00000254950 SF3B1O75533 1304 aaKnown RBP eCLIP12.11□□□□□ -0.471e-6■■■■■ 112
VPS4A-201ENST00000254950 O00370 1275 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 KIF3CO14782 793 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 BDNFP23560 247 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 AP1B1Q10567 949 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 LCLAT1Q6UWP7 414 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 FAM131BQ86XD5 332 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 PALB2Q86YC2 1186 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 TBCBQ99426 244 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 RRN3Q9NYV6 651 aa12.11□□□□□ -0.47
VPS4A-201ENST00000254950 BRCC3P46736 316 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms