RNA–Protein interactions for RNA: ENST00000249837.7

VPS13C-201, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VPS13C, Length 13,300 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-201ENST00000249837 TM4SF1P30408 202 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CNTN2Q02246 1040 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 PIGWQ7Z7B1 504 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ZNF669Q96BR6 464 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 TLCD1Q96CP7 247 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 IRAK4Q9NWZ3 460 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KLK14Q9P0G3 267 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SRRM3A6NNA2 597 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ATP9AO75110 1047 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ZFXP17010 805 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 EFHC2Q5JST6 749 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 OR5B17Q8NGF7 314 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 TRAPPC12Q8WVT3 735 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MIEF2Q96C03 454 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RMDN2Q96LZ7 410 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KCNK16Q96T55 309 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 NT5C1AQ9BXI3 368 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SIK2Q9H0K1 926 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 IL1RL2Q9HB29 575 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MYH14Q7Z406 1995 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KPNA7A9QM74 516 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 TXNP10599 105 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RPL22P35268 128 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RFC5P40937 340 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SERPINB9P50453 376 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MCL1Q07820 350 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 XRCC4Q13426 336 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 HIC1Q14526 733 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CNGA3Q16281 694 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 AMHR2Q16671 573 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KLC3Q6P597 504 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RAB44Q7Z6P3 723 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ECHDC2Q86YB7 292 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 EXOC8Q8IYI6 725 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CCDC138Q96M89 665 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 EFHD1Q9BUP0 239 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 GLIS2Q9BZE0 524 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 GRHL1Q9NZI5 618 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 WDR35Q9P2L0 1181 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 OGTO15294 1046 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 PGK2P07205 417 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KPNB1Q14974 876 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 C4orf50Q6ZRC1 276 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 DEFB129Q9H1M3 183 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 LRRC19Q9H756 370 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CPSF3Q9UKF6 684 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 IL18RAPO95256 599 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MIPP30301 263 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RPL7AP62424 266 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MORF4L2Q15014 288 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SNX30Q5VWJ9 437 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 HEATR6Q6AI08 1181 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 TWF2Q6IBS0 349 aaKnown RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 OTOAQ7RTW8 1153 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SLFN11Q7Z7L1 901 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KATNAL2Q8IYT4 538 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ASAP3Q8TDY4 903 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SPATA33Q96N06 139 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 GLRA2P23416 452 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 RASGEF1CQ8N431 466 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 SHOC2Q9UQ13 582 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 NUP188Q5SRE5 1749 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 CAP2P40123 477 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 GMPSP49915 693 aaPredicted RBP4.8□□□□□ -1.64
VPS13C-201ENST00000249837 NME5P56597 212 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 MAMLD1Q13495 774 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 EML3Q32P44 896 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 LRRC8EQ6NSJ5 796 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 EFCAB12Q6NXP0 572 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 NPNTQ6UXI9 565 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 IFNEQ86WN2 208 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 PDCD2LQ9BRP1 358 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 ELP3Q9H9T3 547 aa4.8□□□□□ -1.64
VPS13C-201ENST00000249837 KBTBD13C9JR72 458 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 MED21Q13503 144 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SLC9A9Q8IVB4 645 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 C20orf96Q9NUD7 363 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 RPS6KL1Q9Y6S9 549 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 XPOTO43592 962 aaKnown RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ITGB5P18084 799 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 KDELR1P24390 212 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 PRAMEP78395 509 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 IL1RL1Q01638 556 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 CACNB2Q08289 660 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 UGCGQ16739 394 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ZCWPW2Q504Y3 356 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TCHHL1Q5QJ38 904 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 ZBTB41Q5SVQ8 909 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 IER5Q5VY09 327 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SAMD7Q7Z3H4 446 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SDCCAG3Q96C92 435 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SPON2Q9BUD6 331 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 TRIP11Q15643 1979 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 O00370 1275 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 DNAJC6O75061 913 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SUPT3HO75486 399 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 S100BP04271 92 aaPredicted RBP4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SCN4BQ8IWT1 228 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 FAM172AQ8WUF8 416 aa4.79□□□□□ -1.64
VPS13C-201ENST00000249837 SHC3Q92529 594 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms