RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 HIRAP54198 1017 aaPredicted RBP19.58■□□□□ 0.73
CPSF3-201ENST00000238112 RAD23BP54727 409 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 ORC1Q13415 861 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 DPYSL3Q14195 570 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 TSHZ1Q6ZSZ6 1077 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 EEPD1Q7L9B9 569 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 MAB21L3Q8N8X9 362 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 SLC7A6OSQ96CW6 309 aaPredicted RBP19.58■□□□□ 0.73
CPSF3-201ENST00000238112 KLRG1Q96E93 195 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 TBC1D10AQ9BXI6 508 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 VPS11Q9H270 941 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 MANSC1Q9H8J5 431 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 SLC17A7Q9P2U7 560 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 USP18Q9UMW8 372 aa19.58■□□□□ 0.73
CPSF3-201ENST00000238112 IQANK1A0A1B0GTG1 560 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 INO80B-WBP1J3KQ70 363 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 CDH8P55286 799 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 ANKRD20A2Q5SQ80 823 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 ANKRD20A1Q5TYW2 823 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 WDR78Q5VTH9 848 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 ANKRD20A3Q5VUR7 823 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 MTDHQ86UE4 582 aaKnown RBP19.58■□□□□ 0.72
CPSF3-201ENST00000238112 APOBEC3FQ8IUX4 373 aaKnown RBP19.58■□□□□ 0.72
CPSF3-201ENST00000238112 EXOC8Q8IYI6 725 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 CEP120Q8N960 986 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 CMASQ8NFW8 434 aaPredicted RBP19.58■□□□□ 0.72
CPSF3-201ENST00000238112 ZNF570Q96NI8 536 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 INO80BQ9C086 356 aaPredicted RBP19.58■□□□□ 0.72
CPSF3-201ENST00000238112 RSAD1Q9HA92 442 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 DCTN4Q9UJW0 460 aa19.58■□□□□ 0.72
CPSF3-201ENST00000238112 PEX10O60683 326 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 LPXNO60711 386 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 TGFB3P10600 412 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 PROZP22891 400 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 ROR1Q01973 937 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 ACAP1Q15027 740 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 TAF5Q15542 800 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 LY6KQ17RY6 165 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 DARS2Q6PI48 645 aaKnown RBP19.57■□□□□ 0.72
CPSF3-201ENST00000238112 FAM13CQ8NE31 585 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 NLRP4Q96MN2 994 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 BCO2Q9BYV7 579 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 RPF1Q9H9Y2 349 aaKnown RBP19.57■□□□□ 0.72
CPSF3-201ENST00000238112 BATF3Q9NR55 127 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 ASNSD1Q9NWL6 643 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 NFKBIEO00221 500 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 ACKR2O00590 384 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 HNRNPCL1O60812 293 aaKnown RBP19.57■□□□□ 0.72
CPSF3-201ENST00000238112 TRUB2O95900 331 aaKnown RBP19.57■□□□□ 0.72
CPSF3-201ENST00000238112 EDNRBP24530 442 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 EPHB2P29323 1055 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 ELK3P41970 407 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 OVGP1Q12889 678 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 PTK7Q13308 1070 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 CDR2LQ86X02 465 aaPredicted RBP19.57■□□□□ 0.72
CPSF3-201ENST00000238112 ZNF668Q96K58 619 aaPredicted RBP19.57■□□□□ 0.72
CPSF3-201ENST00000238112 ADPGKQ9BRR6 497 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 C12orf65Q9H3J6 166 aaKnown RBP19.57■□□□□ 0.72
CPSF3-201ENST00000238112 RNPEPL1Q9HAU8 725 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 SAR1AQ9NR31 198 aa19.57■□□□□ 0.72
CPSF3-201ENST00000238112 SOWAHBA6NEL2 793 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 TRAFD1O14545 582 aaPredicted RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 IL18RAPO95256 599 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 INHBAP08476 426 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 CXCL8P10145 99 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 STIP1P31948 543 aaKnown RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 CCNG1P51959 295 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 PTPN11Q06124 597 aaPredicted RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 CLNKQ7Z7G1 428 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 TRIM50Q86XT4 487 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 KIRREL3Q8IZU9 778 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 TRIM55Q9BYV6 548 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 PTPRHQ9HD43 1115 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 SLC5A4Q9NY91 659 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 M0QYV0 167 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 NOP56O00567 594 aaKnown RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 B4GALT5O43286 388 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 MICAL2O94851 1124 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 ITGBL1O95965 494 aaPredicted RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 NEFHP12036 1026 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 PTPN4P29074 926 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 ZNF200P98182 395 aaPredicted RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 PLEKHG4Q58EX7 1191 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 FAM102AQ5T9C2 384 aaPredicted RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 LBX2Q6XYB7 198 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 ZC3H18Q86VM9 953 aaKnown RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 ZNF276Q8N554 614 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 SLC4A11Q8NBS3 891 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 KCNV2Q8TDN2 545 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 TSSK1BQ9BXA7 367 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 SMYD3Q9H7B4 428 aa19.56■□□□□ 0.72
CPSF3-201ENST00000238112 ALG13Q9NP73 1137 aaKnown RBP19.56■□□□□ 0.72
CPSF3-201ENST00000238112 A0A0G2JND7 137 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 NRLP54845 237 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 YWHAGP61981 247 aaKnown RBP eCLIP19.55■□□□□ 0.72
CPSF3-201ENST00000238112 EEF1DP3Q658K8 133 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 NCAPG2Q86XI2 1143 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 RFWD2Q8NHY2 731 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 MCRS1Q96EZ8 462 aa19.55■□□□□ 0.72
CPSF3-201ENST00000238112 SDCBP2Q9H190 292 aa19.55■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms