RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 SLC8A1P32418 973 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 CLCN3P51790 818 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 GTF2A2P52657 109 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 KPNB1Q14974 876 aaKnown RBP11.21□□□□□ -0.62
USP28-201ENST00000003302 TP53INP2Q8IXH6 220 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 MICALL2Q8IY33 904 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 NLRP4Q96MN2 994 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 SMC6Q96SB8 1091 aa11.21□□□□□ -0.62
USP28-201ENST00000003302 NUP205Q92621 2012 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 DPPA5A6NC42 116 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 SPATA31C2B4DYI2 1134 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 SMAPO00193 183 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 OATP04181 439 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 RGS7P49802 495 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 RABGGTBP53611 331 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 EFHC2Q5JST6 749 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 CLEC4CQ8WTT0 213 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 IFT74Q96LB3 600 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 NUDCD1Q96RS6 583 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 CGRRF1Q99675 332 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 LRMDAQ9H2I8 198 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 ZNF302Q9NR11 478 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 MAFBQ9Y5Q3 323 aaPredicted RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 EYSQ5T1H1 3165 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 SPDYE16A6NNV3 312 aaPredicted RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 PSAPP07602 524 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 CCND2P30279 289 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 LRRC8CQ8TDW0 803 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 GRK7Q8WTQ7 553 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 PYROXD1Q8WU10 500 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 ATP6V0A1Q93050 837 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 CFAP57Q96MR6 1250 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 EBF4Q9BQW3 602 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 SLC13A1Q9BZW2 595 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 NOP53Q9NZM5 478 aaKnown RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 XPO7Q9UIA9 1087 aaKnown RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 GJD2Q9UKL4 321 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 SYNPO2Q9UMS6 1093 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 STARD13Q9Y3M8 1113 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 SNCAIPQ9Y6H5 919 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 NFASCO94856 1347 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 NFKBIEO00221 500 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 PPEF2O14830 753 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 ARRB2P32121 409 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 GBP1P32455 592 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 ETV4P43268 484 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 MRPS5P82675 430 aaKnown RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 C1QBPQ07021 282 aaKnown RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 RELL1Q8IUW5 271 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 BANPQ8N9N5 519 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 TRPM4Q8TD43 1214 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 IWS1Q96ST2 819 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 ELOVL4Q9GZR5 314 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 SZT2Q5T011 3432 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 CITO14578 2027 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 MAGEB2O15479 319 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 USP1O94782 785 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 KDELR1P24390 212 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 IL4RP24394 825 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 ANKRD35Q8N283 1001 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 NSUN6Q8TEA1 469 aaKnown RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 NDRG1Q92597 394 aaKnown RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 YIPF3Q9GZM5 350 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 ZCWPW1Q9H0M4 648 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 STMN4Q9H169 189 aaPredicted RBP11.2□□□□□ -0.62
USP28-201ENST00000003302 AGTPBP1Q9UPW5 1226 aa11.2□□□□□ -0.62
USP28-201ENST00000003302 DCAF8L1A6NGE4 600 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 GPR25O00155 361 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 PRPF4O43172 522 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP28-201ENST00000003302 ADCY6O43306 1168 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 TBX10O75333 385 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 RBP3P10745 1247 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 AMHR2Q16671 573 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 MOB2Q70IA6 237 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP28-201ENST00000003302 RNPEPL1Q9HAU8 725 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 TAS2R1Q9NYW7 299 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 CTDP1Q9Y5B0 961 aaPredicted RBP11.19□□□□□ -0.62
USP28-201ENST00000003302 SMNDC1O75940 238 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP28-201ENST00000003302 FARP2O94887 1054 aaPredicted RBP11.19□□□□□ -0.62
USP28-201ENST00000003302 DLDP09622 509 aaKnown RBP11.19□□□□□ -0.62
USP28-201ENST00000003302 KRT3P12035 628 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 NEK3P51956 506 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 PSMC1P62191 440 aaKnown RBP11.19□□□□□ -0.62
USP28-201ENST00000003302 LIN9Q5TKA1 542 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 C1orf127Q8N9H9 656 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 MCPH1Q8NEM0 835 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 SPATA18Q8TC71 538 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 LPAR1Q92633 364 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 CFAP36Q96G28 342 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 CPB2Q96IY4 423 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 PLVAPQ9BX97 442 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 PACSIN3Q9UKS6 424 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 HEY1Q9Y5J3 304 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 MEI4A8MW99 385 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 TJP3O95049 919 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 TCF7P36402 384 aaPredicted RBP11.19□□□□□ -0.62
USP28-201ENST00000003302 GMPSP49915 693 aaPredicted RBP11.19□□□□□ -0.62
USP28-201ENST00000003302 TAF11Q15544 211 aa11.19□□□□□ -0.62
USP28-201ENST00000003302 XKR3Q5GH77 459 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms