RNA–Protein interactions for RNA: ENSMUST00000040182.12

Ccdc88a-201, Transcript of Girdin, mousemouse

APPRIS P1 TSL 5 BASIC

Gene Ccdc88a, Length 9,376 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88a-201ENSMUST00000040182 Znf451Q8C0P7 1056 aa17.16■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Mettl21eQ8CDZ2 244 aa17.16■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Lman1lQ8VCD3 505 aa17.16■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 PtpruB1AUH1 1446 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Tmx2Q9D710 295 aaKnown RBP17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ascc3E9PZJ8 2198 aaKnown RBP17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Foxm1O08696 760 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Usp39Q3TIX9 564 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 DcstampQ7TNJ0 470 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Slitrk1Q810C1 696 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ccdc32Q8BS39 179 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 WdpcpQ8C456 722 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Mlc1Q8VHK5 382 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Med24Q99K74 987 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ndufaf7Q9CWG8 436 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Prkab1Q9R078 270 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ap3d1O54774 1199 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Cyp2c37P56654 490 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Tdpoz3Q717B4 365 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Mzt2Q9CQ25 159 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 CenpaO35216 134 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Tnni3kQ5GIG6 834 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Cep78Q6IRU7 790 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Kcnk18Q6VV64 394 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Rfx4Q7TNK1 735 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Olfr693Q8VF89 316 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Pcdhgb4Q91XX6 912 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Kcnd2Q9Z0V2 630 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 ClockO08785 855 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Nr1h2Q60644 446 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Q8BWQ6 963 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Rab11fip1Q9D620 645 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Mocs3A2BDX3 460 aaKnown RBP17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 ItgalP24063 1163 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Klra7Q60654 280 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Tmtc3Q8BRH0 920 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Noxred1Q9D3S5 366 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Sbno2Q7TNB8 1349 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Cdc73Q8JZM7 531 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 OplahQ8K010 1288 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 PyglQ9ET01 850 aa17.15■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 NinQ61043 2035 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Cyp2c23E9Q5K4 494 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ugt1a6bK9J7B2 531 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Fam169aQ5XG69 665 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ugt1a6Q64435 531 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ugt1a7cQ6ZQM8 531 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Ms4a5Q810P8 197 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Kdm4bQ91VY5 1086 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 Vps11Q91W86 941 aaKnown RBP17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 MaddQ80U28 1577 aa17.14■□□□□ 0.34
Ccdc88a-201ENSMUST00000040182 RarbP22605 482 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 ZbbxQ0P5X5 716 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Afg1lQ3V384 480 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Cfap61Q8CEL2 1252 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 CoprsQ9CQ13 173 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Ndufb9Q9CQJ8 179 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Map1bP14873 2464 aaKnown RBP17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Traf2P39429 501 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Olfr119Q7TRJ5 321 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Phtf1Q9QZ09 761 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Sh2d3cQ9QZS8 854 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Irf8P23611 424 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 SykP48025 629 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Thnsl1Q8BH55 747 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Slc4a5E9Q3M5 1116 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Nrif2Q921B4 824 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Gm17093F6XGJ4 214 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Rnpc3Q3UZ01 514 aaKnown RBP17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Exd2Q8VEG4 650 aaKnown RBP17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Emc2Q9CRD2 297 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Hmg20aQ9DC33 346 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Scgb2b20Q9JI02 112 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 D830030K20RikE9PYQ5 218 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Gm3043K7N693 218 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 LxnP70202 222 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 NfiaQ02780 532 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Acat1Q8QZT1 424 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Agap3Q8VHH5 910 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Smap1Q91VZ6 440 aa17.14■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Ccnd2P30280 289 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Msh2P43247 935 aaKnown RBP17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Itga7Q61738 1179 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Tti1Q91V83 1085 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 RnmtQ9D0L8 465 aaKnown RBP17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Dnmt1P13864 1620 aaKnown RBP17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Chp1P61022 195 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Usp7Q6A4J8 1103 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Peg10Q7TN75 958 aaKnown RBP17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Syne4Q8CII8 388 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Usp4P35123 962 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Adcy6Q01341 1165 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Zhx2Q8C0C0 836 aaKnown RBP17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Dcaf6Q9DC22 876 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Rps6ka4Q9Z2B9 773 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 CpdO89001 1377 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Gm21964A0A1W2P7S4 437 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Tmem45a2B7ZWJ5 289 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 Q6DFW0 481 aa17.13■□□□□ 0.33
Ccdc88a-201ENSMUST00000040182 N4bp2l2Q8JZS6 575 aa17.13■□□□□ 0.33
Retrieved 100 of 22,080 RNA–protein pairs in 19.5 ms