RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	SEC11	P15367	167 aa		4.16	□□□□□ -1.74
TFB4	YPR056W	STF2	P16965	84 aa		4.16	□□□□□ -1.74
TFB4	YPR056W	PAU2	P32612	120 aa		4.16	□□□□□ -1.74
TFB4	YPR056W	LSM2	P38203	95 aa	Known RBP	4.16	□□□□□ -1.74
TFB4	YPR056W	YFL065C	P43539	102 aa		4.16	□□□□□ -1.74
TFB4	YPR056W	RPL22B	P56628	122 aa	Known RBP	4.16	□□□□□ -1.74
TFB4	YPR056W	YPR203W	Q08994	102 aa		4.16	□□□□□ -1.74
TFB4	YPR056W	SUS1	Q6WNK7	96 aa		4.16	□□□□□ -1.74
TFB4	YPR056W	RPS25B	P0C0T4	108 aa	Known RBP	4.15	□□□□□ -1.75
TFB4	YPR056W	YFL051C	P43552	160 aa		4.15	□□□□□ -1.75
TFB4	YPR056W	DAD4	P69851	72 aa		4.15	□□□□□ -1.75
TFB4	YPR056W	YLR363W-A	Q3E747	85 aa		4.15	□□□□□ -1.75
TFB4	YPR056W	RPS25A	Q3E792	108 aa	Predicted RBP	4.15	□□□□□ -1.75
TFB4	YPR056W	SEC7	P11075	2009 aa	Known RBP	4.14	□□□□□ -1.75
TFB4	YPR056W	RTC6	O14464	93 aa		4.14	□□□□□ -1.75
TFB4	YPR056W	SOD1	P00445	154 aa	Known RBP	4.14	□□□□□ -1.75
TFB4	YPR056W	YCR085W	P25650	117 aa		4.14	□□□□□ -1.75
TFB4	YPR056W	YDR114C	Q04597	100 aa		4.14	□□□□□ -1.75
TFB4	YPR056W	DNA2	P38859	1522 aa		4.14	□□□□□ -1.75
TFB4	YPR056W	SCC2	Q04002	1493 aa		4.13	□□□□□ -1.75
TFB4	YPR056W	RPL26A	P05743	127 aa	Known RBP	4.13	□□□□□ -1.75
TFB4	YPR056W	RPL26B	P53221	127 aa	Known RBP	4.13	□□□□□ -1.75
TFB4	YPR056W	EMC6	Q12431	108 aa		4.13	□□□□□ -1.75
TFB4	YPR056W	YMR030W-A	Q3E760	96 aa		4.13	□□□□□ -1.75
TFB4	YPR056W	RPA12	P32529	125 aa	Known RBP	4.12	□□□□□ -1.75
TFB4	YPR056W	YBR013C	P38215	129 aa		4.12	□□□□□ -1.75
TFB4	YPR056W	HYR1	P40581	163 aa	Known RBP	4.12	□□□□□ -1.75
TFB4	YPR056W	FIT2	Q08906	153 aa		4.12	□□□□□ -1.75
TFB4	YPR056W	POC4	Q12245	148 aa	Predicted RBP	4.12	□□□□□ -1.75
TFB4	YPR056W	TY1B-GR3	Q12316	1755 aa		4.12	□□□□□ -1.75
TFB4	YPR056W	TY1B-OR	Q92393	1755 aa		4.12	□□□□□ -1.75
TFB4	YPR056W	FAS2	P19097	1887 aa	Known RBP	4.11	□□□□□ -1.75
TFB4	YPR056W	GSC2	P40989	1895 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	YJL197C-A	P0C5P0	93 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	PAU19	P0CE85	124 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	KRE1	P17260	313 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	PAU3	P25610	124 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	PAU24	P38155	120 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	YER084W	P40057	128 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	SNN1	P48232	102 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	VPS68	Q12016	184 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	YMR175W-A	Q3E766	64 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	CMC4	Q3E7A9	73 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	PCC1	Q3E833	88 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-DR5	P0C2I2	1755 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-DR6	P0C2I3	1755 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-LR2	P0C2I5	1755 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-LR3	P0C2I6	1755 aa	Known RBP	4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-PR1	P0C2I9	1755 aa	Known RBP	4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-PR3	P0C2J1	1755 aa	Known RBP	4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-JR1	P47098	1755 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-ML2	Q03434	1755 aa	Known RBP	4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-ER1	Q03612	1755 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-ML1	Q04711	1755 aa	Known RBP	4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-GR2	Q12269	1755 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-OL	Q12273	1755 aa		4.11	□□□□□ -1.75
TFB4	YPR056W	TY1B-PL	Q12414	1755 aa	Known RBP	4.11	□□□□□ -1.75
TFB4	YPR056W	YHR213W	P0CI67	198 aa		4.1	□□□□□ -1.75
TFB4	YPR056W	ATG8	P38182	117 aa	RIP-Chip data	4.1	□□□□□ -1.75	not detected
TFB4	YPR056W	YEL014C	P39999	101 aa		4.1	□□□□□ -1.75
TFB4	YPR056W	YIR020C	P40575	100 aa		4.1	□□□□□ -1.75
TFB4	YPR056W	YHL005C	P38752	130 aa		4.09	□□□□□ -1.75
TFB4	YPR056W	RGM1	Q00453	211 aa		4.09	□□□□□ -1.75
TFB4	YPR056W	GDB1	Q06625	1536 aa		4.09	□□□□□ -1.75
TFB4	YPR056W	MYO1	P08964	1928 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	SIN3	P22579	1536 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	HSP150	P32478	413 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	RPB7	P34087	171 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	PAU16	P35994	123 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	RSM18	P40033	138 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	PAU15	P40585	124 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	POP3	P53833	195 aa	Predicted RBP	4.08	□□□□□ -1.76
TFB4	YPR056W	YIL014C-A	Q02598	104 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	MET31	Q03081	177 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	ENV10	Q99382	181 aa		4.08	□□□□□ -1.76
TFB4	YPR056W	FAS1	P07149	2051 aa	Known RBP	4.07	□□□□□ -1.76
TFB4	YPR056W	YLR419W	Q06698	1435 aa	Known RBP	4.07	□□□□□ -1.76
TFB4	YPR056W	SMC4	Q12267	1418 aa		4.07	□□□□□ -1.76
TFB4	YPR056W	RPL36B	O14455	100 aa	Known RBP	4.07	□□□□□ -1.76
TFB4	YPR056W	PAI3	P01094	68 aa		4.07	□□□□□ -1.76
TFB4	YPR056W	RPL36A	P05745	100 aa	Predicted RBP	4.07	□□□□□ -1.76
TFB4	YPR056W	UTR5	P32630	166 aa		4.07	□□□□□ -1.76
TFB4	YPR056W	UTH1	P36135	365 aa		4.07	□□□□□ -1.76
TFB4	YPR056W	MRPS9	P38120	278 aa		4.07	□□□□□ -1.76
TFB4	YPR056W	YLR194C	Q05777	254 aa		4.07	□□□□□ -1.76
TFB4	YPR056W	MHF1	Q3E835	90 aa		4.07	□□□□□ -1.76
TFB4	YPR056W	TCB3	Q03640	1545 aa	Known RBP	4.06	□□□□□ -1.76
TFB4	YPR056W	MMS22	Q06164	1454 aa		4.06	□□□□□ -1.76
TFB4	YPR056W	YFR010W-A	P0C5N0	62 aa		4.06	□□□□□ -1.76
TFB4	YPR056W	GCV3	P39726	170 aa	Predicted RBP	4.06	□□□□□ -1.76
TFB4	YPR056W	PRM3	Q08931	133 aa		4.06	□□□□□ -1.76
TFB4	YPR056W	YJR146W	P47174	117 aa		4.05	□□□□□ -1.76
TFB4	YPR056W	ICY1	Q04329	127 aa		4.05	□□□□□ -1.76
TFB4	YPR056W	RIF1	P29539	1916 aa		4.04	□□□□□ -1.76
TFB4	YPR056W	FPR1	P20081	114 aa	Known RBP	4.04	□□□□□ -1.76
TFB4	YPR056W	SRX1	P36077	127 aa		4.04	□□□□□ -1.76
TFB4	YPR056W	AVO2	Q04749	426 aa		4.04	□□□□□ -1.76
TFB4	YPR056W	SML1	Q04964	104 aa		4.04	□□□□□ -1.76
TFB4	YPR056W	QCR8	P08525	94 aa		4.03	□□□□□ -1.76
TFB4	YPR056W	COX23	P38824	151 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 39.9 ms