RNA–Protein interactions for RNA: YGR013W

SNU71, Transcript of Component of U1 snRNP required for mRNA splicing via spliceosome, yeast

Gene SNU71, Length 1,863 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SNU71	YGR013W	FYV4	P38783	130 aa	Predicted RBP	4.69	□□□□□ -1.66
SNU71	YGR013W	PIR5	P46999	287 aa		4.69	□□□□□ -1.66
SNU71	YGR013W	YGL230C	P53074	147 aa		4.69	□□□□□ -1.66
SNU71	YGR013W	VPS71	Q03433	280 aa		4.69	□□□□□ -1.66
SNU71	YGR013W	YKR032W	P36127	104 aa		4.69	□□□□□ -1.66
SNU71	YGR013W	RAS2	P01120	322 aa	Known RBP	4.68	□□□□□ -1.66
SNU71	YGR013W	RAD6	P06104	172 aa		4.68	□□□□□ -1.66
SNU71	YGR013W	UBC5	P15732	148 aa		4.68	□□□□□ -1.66
SNU71	YGR013W	SHB17	P36136	271 aa	Known RBP	4.68	□□□□□ -1.66
SNU71	YGR013W	TRS20	P38334	175 aa		4.68	□□□□□ -1.66
SNU71	YGR013W	SUS1	Q6WNK7	96 aa		4.68	□□□□□ -1.66
SNU71	YGR013W	MIG1	P27705	504 aa		4.67	□□□□□ -1.66
SNU71	YGR013W	YIL059C	P40520	121 aa		4.67	□□□□□ -1.66
SNU71	YGR013W	PAU15	P40585	124 aa		4.67	□□□□□ -1.66
SNU71	YGR013W	YFL065C	P43539	102 aa		4.67	□□□□□ -1.66
SNU71	YGR013W	ANT1	Q06497	328 aa		4.67	□□□□□ -1.66
SNU71	YGR013W	YPR203W	Q08994	102 aa		4.67	□□□□□ -1.66
SNU71	YGR013W	MHF1	Q3E835	90 aa		4.67	□□□□□ -1.66
SNU71	YGR013W	MRP17	P28778	131 aa		4.66	□□□□□ -1.66
SNU71	YGR013W	SBH1	P52870	82 aa		4.66	□□□□□ -1.66
SNU71	YGR013W	POR1	P04840	283 aa	Known RBP	4.66	□□□□□ -1.66
SNU71	YGR013W	HMRA1	P0CY11	126 aa		4.66	□□□□□ -1.66
SNU71	YGR013W	MRPS9	P38120	278 aa		4.66	□□□□□ -1.66
SNU71	YGR013W	GCV3	P39726	170 aa	Predicted RBP	4.66	□□□□□ -1.66
SNU71	YGR013W	YER181C	P40097	107 aa		4.66	□□□□□ -1.66
SNU71	YGR013W	AVO2	Q04749	426 aa		4.66	□□□□□ -1.66
SNU71	YGR013W	PRM3	Q08931	133 aa		4.66	□□□□□ -1.66
SNU71	YGR013W	YGR219W	P53307	113 aa		4.65	□□□□□ -1.66
SNU71	YGR013W	FIT1	Q04433	528 aa		4.65	□□□□□ -1.66
SNU71	YGR013W	KTI11	Q3E840	82 aa		4.65	□□□□□ -1.66
SNU71	YGR013W	MSL1	P40567	111 aa	Predicted RBP	4.64	□□□□□ -1.67
SNU71	YGR013W	YNL033W	P53964	284 aa		4.64	□□□□□ -1.67
SNU71	YGR013W	YNL019C	P53975	284 aa		4.64	□□□□□ -1.67
SNU71	YGR013W	YPR174C	Q06616	221 aa	Predicted RBP	4.64	□□□□□ -1.67
SNU71	YGR013W	PAM16	P42949	149 aa		4.64	□□□□□ -1.67
SNU71	YGR013W	MPC3	P53311	146 aa		4.64	□□□□□ -1.67
SNU71	YGR013W	MET31	Q03081	177 aa		4.64	□□□□□ -1.67
SNU71	YGR013W	SRX1	P36077	127 aa		4.63	□□□□□ -1.67
SNU71	YGR013W	UMP1	P38293	148 aa		4.63	□□□□□ -1.67
SNU71	YGR013W	YJL218W	P40892	196 aa	Known RBP	4.63	□□□□□ -1.67
SNU71	YGR013W	YGL193C	P53097	103 aa		4.63	□□□□□ -1.67
SNU71	YGR013W	UPS1	Q05776	175 aa		4.63	□□□□□ -1.67
SNU71	YGR013W	YLR042C	Q07990	161 aa		4.63	□□□□□ -1.67
SNU71	YGR013W	YKL018C-A	Q3E7A7	99 aa		4.63	□□□□□ -1.67
SNU71	YGR013W	PAU19	P0CE85	124 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	PAU21	P0CE86	164 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	PAU22	P0CE87	164 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	PAU3	P25610	124 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	YHR180W	P38868	163 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	YGR039W	P53225	103 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	GCN1	P33892	2672 aa	Known RBP	4.62	□□□□□ -1.67
SNU71	YGR013W	POL2	P21951	2222 aa	Known RBP	4.62	□□□□□ -1.67
SNU71	YGR013W	FMP49	A0A023PZB3	126 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	FCY1	Q12178	158 aa		4.62	□□□□□ -1.67
SNU71	YGR013W	RPS23A	P0CX29	145 aa	Known RBP	4.61	□□□□□ -1.67
SNU71	YGR013W	RPS23B	P0CX30	145 aa		4.61	□□□□□ -1.67
SNU71	YGR013W	YEL073C	P39974	107 aa		4.61	□□□□□ -1.67
SNU71	YGR013W	YER084W	P40057	128 aa		4.61	□□□□□ -1.67
SNU71	YGR013W	MRPS8	Q03799	155 aa		4.61	□□□□□ -1.67
SNU71	YGR013W	ATP20	Q12233	115 aa		4.61	□□□□□ -1.67
SNU71	YGR013W	BOL1	Q3E793	110 aa		4.61	□□□□□ -1.67
SNU71	YGR013W	CUP1-1	P0CX80	61 aa		4.6	□□□□□ -1.67
SNU71	YGR013W	CUP1-2	P0CX81	61 aa		4.6	□□□□□ -1.67
SNU71	YGR013W	NSA2	P40078	261 aa	Known RBP	4.6	□□□□□ -1.67
SNU71	YGR013W	YNL198C	P40166	100 aa		4.6	□□□□□ -1.67
SNU71	YGR013W	EMC5	P40540	141 aa		4.6	□□□□□ -1.67
SNU71	YGR013W	YDL157C	Q12082	118 aa		4.6	□□□□□ -1.67
SNU71	YGR013W	HFA1	P32874	2273 aa		4.59	□□□□□ -1.67
SNU71	YGR013W	ATX1	P38636	73 aa		4.59	□□□□□ -1.67
SNU71	YGR013W	YHR138C	P38841	114 aa	Predicted RBP	4.59	□□□□□ -1.67
SNU71	YGR013W	CWP2	P43497	92 aa		4.59	□□□□□ -1.67
SNU71	YGR013W	GPI2	P46961	280 aa		4.59	□□□□□ -1.67
SNU71	YGR013W	GEP7	P53171	287 aa		4.59	□□□□□ -1.67
SNU71	YGR013W	YMR082C	Q04276	118 aa		4.59	□□□□□ -1.67
SNU71	YGR013W	YDR029W	Q12111	104 aa		4.59	□□□□□ -1.67
SNU71	YGR013W	TRA1	P38811	3744 aa		4.59	□□□□□ -1.68
SNU71	YGR013W	SRP21	P32342	167 aa		4.58	□□□□□ -1.68
SNU71	YGR013W	HTD2	P38790	280 aa	Known RBP	4.58	□□□□□ -1.68
SNU71	YGR013W	SFT1	P43682	97 aa		4.58	□□□□□ -1.68
SNU71	YGR013W	FIT3	Q08907	204 aa		4.58	□□□□□ -1.68
SNU71	YGR013W	YNL277W-A	Q3E7Z0	62 aa		4.58	□□□□□ -1.68
SNU71	YGR013W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SNU71	YGR013W	VPS68	Q12016	184 aa		4.58	□□□□□ -1.68
SNU71	YGR013W	ECM12	O13529	151 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	RPB11	P38902	120 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	CUP9	P41817	306 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	YMR295C	Q03559	197 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	YMR103C	Q04436	120 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	KEI1	Q06346	221 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	SYM1	Q06563	197 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	HRT1	Q08273	121 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	STT4	P37297	1900 aa		4.57	□□□□□ -1.68
SNU71	YGR013W	YKR070W	P36151	352 aa	Known RBP	4.56	□□□□□ -1.68
SNU71	YGR013W	MPC1	P53157	130 aa	Known RBP	4.56	□□□□□ -1.68
SNU71	YGR013W	YNR077C	P53758	84 aa		4.56	□□□□□ -1.68
SNU71	YGR013W	NMA1	Q06178	401 aa	Known RBP	4.56	□□□□□ -1.68
SNU71	YGR013W	YHR140W	P38842	239 aa		4.56	□□□□□ -1.68
SNU71	YGR013W	CCS1	P40202	249 aa	Known RBP	4.56	□□□□□ -1.68
SNU71	YGR013W	BAT2	P47176	376 aa	Known RBP	4.56	□□□□□ -1.68
SNU71	YGR013W	YMR090W	Q04304	227 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 80.9 ms