RNA–Protein interactions for RNA: YFL028C

CAF16, Transcript of Part of evolutionarily-conserved CCR4-NOT regulatory complex, yeast

Gene CAF16, Length 870 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF16	YFL028C	QCR9	P22289	66 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	SPO13	P23624	291 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	SHB17	P36136	271 aa	Known RBP	3.15	□□□□□ -1.91
CAF16	YFL028C	SNU13	P39990	126 aa	Known RBP	3.15	□□□□□ -1.91
CAF16	YFL028C	EMC5	P40540	141 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	SHH3	Q04487	196 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	AVO2	Q04749	426 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	YOL160W	Q08321	113 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	PRM3	Q08931	133 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	YOR015W	Q12169	119 aa		3.15	□□□□□ -1.91
CAF16	YFL028C	YHR213W	P0CI67	198 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	DER1	P38307	211 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	YBR292C	P38357	123 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	VMA7	P39111	118 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	GLE2	P40066	365 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	SMD3	P43321	101 aa	Known RBP	3.14	□□□□□ -1.91
CAF16	YFL028C	SNX4	P47057	423 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	DSK2	P48510	373 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	YGR026W	P53217	278 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	YPR013C	Q12145	317 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	ATP14	Q12349	124 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	COX19	Q3E731	98 aa		3.14	□□□□□ -1.91
CAF16	YFL028C	SFT2	P38166	215 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	SPC25	P40014	221 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	POR2	P40478	281 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	IMP2	P46972	177 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	UBC12	P52491	188 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	ORM1	P53224	222 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	DIA1	P54005	336 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	YCL001W-A	P87012	153 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	VPS71	Q03433	280 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	SDH7	Q04401	133 aa		3.13	□□□□□ -1.91
CAF16	YFL028C	UTR5	P32630	166 aa		3.12	□□□□□ -1.91
CAF16	YFL028C	LSM2	P38203	95 aa	Known RBP	3.12	□□□□□ -1.91
CAF16	YFL028C	SEC72	P39742	193 aa	Known RBP	3.12	□□□□□ -1.91
CAF16	YFL028C	YJR146W	P47174	117 aa		3.12	□□□□□ -1.91
CAF16	YFL028C	TMA23	Q03525	211 aa		3.12	□□□□□ -1.91
CAF16	YFL028C	TAR1	Q8TGM6	124 aa		3.12	□□□□□ -1.91
CAF16	YFL028C	RPL26A	P05743	127 aa	Known RBP	3.11	□□□□□ -1.91
CAF16	YFL028C	SHG1	P38337	142 aa		3.11	□□□□□ -1.91
CAF16	YFL028C	MRPL49	P40858	161 aa	Predicted RBP	3.11	□□□□□ -1.91
CAF16	YFL028C	SNN1	P48232	102 aa		3.11	□□□□□ -1.91
CAF16	YFL028C	RPL26B	P53221	127 aa	Known RBP	3.11	□□□□□ -1.91
CAF16	YFL028C	YPL162C	Q12042	273 aa		3.11	□□□□□ -1.91
CAF16	YFL028C	VMA9	Q3E7B6	73 aa		3.11	□□□□□ -1.91
CAF16	YFL028C	MRS1	P07266	363 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	YLR156W	P0CE96	114 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	YLR159W	P0CE97	114 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	YLR161W	P0CE98	114 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	RPL14A	P36105	138 aa	Known RBP	3.1	□□□□□ -1.91
CAF16	YFL028C	TRS20	P38334	175 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	RPL14B	P38754	138 aa	Known RBP	3.1	□□□□□ -1.91
CAF16	YFL028C	MPC2	P38857	129 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	SNF11	P38956	169 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	YGR025W	P53216	100 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	PAU4	P53427	120 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	FIT2	Q08906	153 aa		3.1	□□□□□ -1.91
CAF16	YFL028C	DDI2	P0CH63	225 aa		3.09	□□□□□ -1.91
CAF16	YFL028C	DDI3	P0CH64	225 aa		3.09	□□□□□ -1.91
CAF16	YFL028C	HSP12	P22943	109 aa	Known RBP	3.09	□□□□□ -1.91
CAF16	YFL028C	ACP1	P32463	125 aa		3.09	□□□□□ -1.91
CAF16	YFL028C	TDA4	P47153	279 aa		3.09	□□□□□ -1.91
CAF16	YFL028C	YFR032C-B	Q8TGU2	87 aa		3.09	□□□□□ -1.91
CAF16	YFL028C	IGO2	Q9P305	131 aa		3.09	□□□□□ -1.91
CAF16	YFL028C	PAU1	P0CE88	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU14	P0CE89	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU6	P0CE90	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU18	P0CE91	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU8	P0CE92	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU11	P0CE93	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	SCM4	P32564	187 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU13	P38725	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	GPI2	P46961	280 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	YDR274C	P87283	123 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	UBC7	Q02159	165 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU10	Q03050	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	RAV2	Q03956	351 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU20	Q08322	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	PAU9	Q3E770	120 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	YOR011W-A	Q3E807	68 aa		3.08	□□□□□ -1.92
CAF16	YFL028C	YHR173C	P38864	112 aa		3.07	□□□□□ -1.92
CAF16	YFL028C	HUA1	P40325	198 aa		3.07	□□□□□ -1.92
CAF16	YFL028C	YIL163C	P40448	117 aa		3.07	□□□□□ -1.92
CAF16	YFL028C	TOM7	P53507	60 aa		3.07	□□□□□ -1.92
CAF16	YFL028C	YIP3	P53633	176 aa		3.07	□□□□□ -1.92
CAF16	YFL028C	SNO1	Q03144	224 aa		3.07	□□□□□ -1.92
CAF16	YFL028C	RPS22A	P0C0W1	130 aa	Known RBP	3.06	□□□□□ -1.92
CAF16	YFL028C	RPB3	P16370	318 aa	Known RBP	3.06	□□□□□ -1.92
CAF16	YFL028C	SRB6	P32570	121 aa		3.06	□□□□□ -1.92
CAF16	YFL028C	YMR253C	Q04835	414 aa		3.06	□□□□□ -1.92
CAF16	YFL028C	YPR145C-A	Q2V2P0	78 aa		3.06	□□□□□ -1.92
CAF16	YFL028C	YNL146C-A	Q3E7Z1	64 aa		3.06	□□□□□ -1.92
CAF16	YFL028C	MDN1	Q12019	4910 aa	Known RBP	3.05	□□□□□ -1.92
CAF16	YFL028C	YBR090C	P38253	122 aa		3.05	□□□□□ -1.92
CAF16	YFL028C	YER135C	P40082	130 aa		3.05	□□□□□ -1.92
CAF16	YFL028C	YMR141C	P40211	102 aa		3.05	□□□□□ -1.92
CAF16	YFL028C	CYB5	P40312	120 aa		3.05	□□□□□ -1.92
CAF16	YFL028C	PHS1	P40857	217 aa		3.05	□□□□□ -1.92
CAF16	YFL028C	PCC1	Q3E833	88 aa		3.05	□□□□□ -1.92
CAF16	YFL028C	SEC59	P20048	519 aa		3.04	□□□□□ -1.92

Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms