RNA–Protein interactions for RNA: YDR335W

MSN5, Transcript of Karyopherin, yeast

Gene MSN5, Length 3,675 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSN5	YDR335W	ODC2	Q99297	307 aa		0.89	□□□□□ -2.27
MSN5	YDR335W	HYP2	P23301	157 aa	Known RBP	0.89	□□□□□ -2.27
MSN5	YDR335W	MPM1	P40364	252 aa		0.89	□□□□□ -2.27
MSN5	YDR335W	YDL241W	Q07738	123 aa		0.89	□□□□□ -2.27
MSN5	YDR335W	FCF2	Q12035	217 aa	Predicted RBP	0.89	□□□□□ -2.27
MSN5	YDR335W	YMR175W-A	Q3E766	64 aa		0.89	□□□□□ -2.27
MSN5	YDR335W	YKL068W-A	Q3E826	78 aa		0.89	□□□□□ -2.27
MSN5	YDR335W	STT4	P37297	1900 aa		0.89	□□□□□ -2.27
MSN5	YDR335W	ANB1	P19211	157 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YCR050C	P25630	102 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	QCR10	P37299	77 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	ERV15	P38312	142 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YHL005C	P38752	130 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	RPB11	P38902	120 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YEL073C	P39974	107 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YIR020C	P40575	100 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	PRE1	P22141	198 aa	Known RBP	0.88	□□□□□ -2.27
MSN5	YDR335W	HUR1	P45820	110 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	GIS2	P53849	153 aa	Known RBP RIP-Chip data	0.88	□□□□□ -2.27	not detected
MSN5	YDR335W	MIX17	Q03667	156 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YLR042C	Q07990	161 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YLR236C	A0A023PZG4	107 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	HSP26	P15992	214 aa	Known RBP RIP-Chip data	0.88	□□□□□ -2.27	not detected
MSN5	YDR335W	MID2	P36027	376 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YRA2	P36036	203 aa	Known RBP RIP-Chip data	0.88	□□□□□ -2.27	not detected
MSN5	YDR335W	YKR045C	P36138	183 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YHR180W	P38868	163 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	SVP26	P38869	228 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	SNF11	P38956	169 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YER187W	P40102	141 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	FIT2	Q08906	153 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	ATG41	Q12048	136 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	YBR298C-A	Q8TGK4	73 aa		0.88	□□□□□ -2.27
MSN5	YDR335W	PAU21	P0CE86	164 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	PAU22	P0CE87	164 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	STF2	P16965	84 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	YAR029W	P39549	74 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	PEP8	P40335	379 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	PAM16	P42949	149 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	RSM19	P53733	91 aa	Predicted RBP	0.87	□□□□□ -2.27
MSN5	YDR335W	AVO2	Q04749	426 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	YMR230W-A	Q3E7B5	62 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	RTC6	O14464	93 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	COX8	P04039	78 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	RPS23A	P0CX29	145 aa	Known RBP	0.87	□□□□□ -2.27
MSN5	YDR335W	RPS23B	P0CX30	145 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	DDR48	P18899	430 aa	Known RBP	0.87	□□□□□ -2.27
MSN5	YDR335W	MRPL44	P19956	98 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	FYV5	P25585	152 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	RPA12	P32529	125 aa	Known RBP	0.87	□□□□□ -2.27
MSN5	YDR335W	IPT1	P38954	527 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	GAA1	P39012	614 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	REE1	P40893	198 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	IGO1	P53897	168 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	ATG40	Q99325	256 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	TMA19	P35691	167 aa	Known RBP	0.87	□□□□□ -2.27
MSN5	YDR335W	LSM8	P47093	109 aa	Known RBP	0.87	□□□□□ -2.27
MSN5	YDR335W	CYT2	Q00873	224 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	YML079W	Q03629	201 aa		0.87	□□□□□ -2.27
MSN5	YDR335W	YPR174C	Q06616	221 aa	Predicted RBP	0.87	□□□□□ -2.27
MSN5	YDR335W	MRPS9	P38120	278 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	SPO73	P40031	143 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	CCS1	P40202	249 aa	Known RBP	0.86	□□□□□ -2.27
MSN5	YDR335W	MRPL11	P36521	249 aa	Predicted RBP	0.86	□□□□□ -2.27
MSN5	YDR335W	YBR027C	P38220	110 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	YEL014C	P39999	101 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	CUE4	Q04201	117 aa	Predicted RBP	0.86	□□□□□ -2.27
MSN5	YDR335W	FUN14	P18411	198 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	YGR269W	P40326	108 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	YJL144W	P47009	104 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	ERG25	P53045	309 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	YDR102C	Q03864	110 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	IRC19	Q07843	230 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	RPL13A	Q12690	199 aa	Predicted RBP	0.86	□□□□□ -2.27
MSN5	YDR335W	YLR365W	Q7LIF2	110 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	MED11	Q99278	115 aa		0.86	□□□□□ -2.27
MSN5	YDR335W	YAL064W	P39711	94 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	SNU13	P39990	126 aa	Known RBP	0.85	□□□□□ -2.27
MSN5	YDR335W	TIR3	P40552	269 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	GTT1	P40582	234 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	DOC1	P53068	250 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	GPI19	Q04082	140 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	YOR376W-A	Q3E805	51 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	PRP8	P33334	2413 aa	Known RBP	0.85	□□□□□ -2.27
MSN5	YDR335W	YOL162W	P0CF19	215 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	KRE1	P17260	313 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	YER084W	P40057	128 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	YNL200C	P40165	246 aa	Known RBP	0.85	□□□□□ -2.27
MSN5	YDR335W	YPI1	P43587	155 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	FIT3	Q08907	204 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	MIC10	Q96VH5	97 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	YHL042W	P38729	150 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	RPL13B	P40212	199 aa	Known RBP	0.85	□□□□□ -2.27
MSN5	YDR335W	YIL014C-A	Q02598	104 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	YLR296W	Q05898	108 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	ATG10	Q07879	167 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	YOR268C	Q08734	132 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	YOR015W	Q12169	119 aa		0.85	□□□□□ -2.27
MSN5	YDR335W	MDM35	O60200	86 aa		0.84	□□□□□ -2.27
MSN5	YDR335W	YHR213W	P0CI67	198 aa		0.84	□□□□□ -2.27

Retrieved 100 of 5,963 RNA–protein pairs in 25.3 ms