RNA–Protein interactions for RNA: ENST00000629293.1

LINC00550-201, long intergenic non-protein coding RNA 550, humanhuman

TSL 1 (best) BASIC

Gene LINC00550, Length 3,434 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00550-201ENST00000629293 USP18Q9UMW8 372 aa5.25□□□□□ -1.57
LINC00550-201ENST00000629293 PCDHB6Q9Y5E3 794 aa5.25□□□□□ -1.57
LINC00550-201ENST00000629293 SRPRBQ9Y5M8 271 aaKnown RBP5.25□□□□□ -1.57
LINC00550-201ENST00000629293 FAM170BA6NMN3 283 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 DKC1O60832 514 aaKnown RBP eCLIP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 B3GALT4O96024 378 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 F11P03951 625 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ATP1A3P13637 1013 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 XBP1P17861 261 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TXKP42681 527 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TFDP1Q14186 410 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TPD52L1Q16890 204 aaPredicted RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ZNF423Q2M1K9 1284 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CCDC181Q5TID7 509 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CEP135Q66GS9 1140 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 E4F1Q66K89 784 aaPredicted RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TMC6Q7Z403 805 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TEX2Q8IWB9 1127 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 COLGALT2Q8IYK4 626 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ASAP3Q8TDY4 903 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TCP11Q8WWU5 503 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ZNF707Q96C28 371 aaPredicted RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 MCRS1Q96EZ8 462 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 SLC39A13Q96H72 371 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 INTS13Q9NVM9 706 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 HCFC1R1Q9NWW0 138 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 MAN1B1Q9UKM7 699 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 PCDHA5Q9Y5H7 936 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CNTNAP2Q9UHC6 1331 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ATG2BQ96BY7 2078 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 SMC2O95347 1197 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CAPNS1P04632 268 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 RARAP10276 462 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 GLULP15104 373 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ZNF18P17022 549 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 OR1D2P34982 312 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 OSTNP61366 133 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 MORC3Q14149 939 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 POSTNQ15063 836 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TM4SF20Q53R12 229 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 MRPL14Q6P1L8 145 aaKnown RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 C19orf47Q8N9M1 422 aaKnown RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CNNM3Q8NE01 707 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ITFG1Q8TB96 612 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 FGF13Q92913 245 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CEP89Q96ST8 783 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 TMEM175Q9BSA9 504 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CCDC94Q9BW85 323 aaPredicted RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 CSRNP2Q9H175 543 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 POLR3FQ9H1D9 316 aaPredicted RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 SLITRK6Q9H5Y7 841 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 DHX33Q9H6R0 707 aaKnown RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 SSX2IPQ9Y2D8 614 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 MTF2Q9Y483 593 aaPredicted RBP5.24□□□□□ -1.57
LINC00550-201ENST00000629293 BAHCC1Q9P281 2608 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 ACACAQ13085 2346 aa5.24□□□□□ -1.57
LINC00550-201ENST00000629293 KMT2EQ8IZD2 1858 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 A0A087X0B3 334 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 DCDC2BA2VCK2 349 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 TTLL8A6PVC2 850 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 ADAM12O43184 909 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 DNAJA2O60884 412 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 B3GAT3O94766 335 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 SP9P0CG40 484 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 HARSP12081 509 aaKnown RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 DSG1Q02413 1049 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 CAPSQ13938 189 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 PSMD5Q16401 504 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 EARS2Q5JPH6 523 aaKnown RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 PRR23BQ6ZRT6 265 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 VSTM4Q8IW00 320 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 TRIML1Q8N9V2 468 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 RNF166Q96A37 237 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 ZNF669Q96BR6 464 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 EIF2AK1Q9BQI3 630 aaKnown RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 RASSF4Q9H2L5 321 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 PLEKHA4Q9H4M7 779 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 XPNPEP1Q9NQW7 623 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 VAV3Q9UKW4 847 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 PCDHA12Q9UN75 941 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 MRPS23Q9Y3D9 190 aaKnown RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 GTF3C5Q9Y5Q8 519 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 SF3B1O75533 1304 aaKnown RBP eCLIP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 KIF2AO00139 706 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 PPP1R12AO14974 1030 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 CBFA2T2O43439 604 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 NFKB1P19838 968 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 PTENP60484 403 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 TBX2Q13207 712 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 MXD4Q14582 209 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 EPHA7Q15375 998 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 RSPO4Q2I0M5 234 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 FAM43BQ6ZT52 329 aaPredicted RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 TPRG1Q6ZUI0 275 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 MRPL10Q7Z7H8 261 aaKnown RBP5.23□□□□□ -1.57
LINC00550-201ENST00000629293 HAS1Q92839 578 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 PPP1R13BQ96KQ4 1090 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 FAM20AQ96MK3 541 aa5.23□□□□□ -1.57
LINC00550-201ENST00000629293 MED15Q96RN5 788 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms