RNA–Protein interactions for RNA: ENST00000626660.1

SQSTM1-216, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 274 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-216ENST00000626660 ATXN2LQ8WWM7 1075 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 SMARCD1Q96GM5 515 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 NECTIN4Q96NY8 510 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 HNRNPABQ99729 332 aaKnown RBP20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 GANQ9H2C0 597 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 KRT82Q9NSB4 513 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 IFNKQ9P0W0 207 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 CNTN6Q9UQ52 1028 aa20.28■□□□□ 0.84
SQSTM1-216ENST00000626660 DOCK6Q96HP0 2047 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 GRXCR2A6NFK2 248 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 AP1G2O75843 785 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 FAM200BP0CF97 657 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 PTPN2P17706 415 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 ZNF132P52740 706 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 POLR2FP61218 127 aaKnown RBP20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 DRAP1Q14919 205 aaPredicted RBP20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 NR1I3Q14994 352 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 DDR2Q16832 855 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 ARHGAP17Q68EM7 881 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 GADD45GIP1Q8TAE8 222 aaPredicted RBP20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 STK33Q9BYT3 514 aa20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 DMAP1Q9NPF5 467 aaPredicted RBP20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 AJAP1Q9UKB5 411 aaPredicted RBP20.27■□□□□ 0.84
SQSTM1-216ENST00000626660 RNF225M0QZC1 329 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 NOL4O94818 638 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 ATF6P18850 670 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 CBX2Q14781 532 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 STILQ15468 1287 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 PPP1R26Q5T8A7 1209 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 PAQR9Q6ZVX9 377 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 GRASPQ7Z6J2 395 aaPredicted RBP20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 GIPC2Q8TF65 315 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 SUSD6Q92537 303 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 C8orf48Q96LL4 319 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 CEP295NLQ96MC4 621 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 SPAG5Q96R06 1193 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 NAA15Q9BXJ9 866 aaKnown RBP20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 CEP72Q9P209 647 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 HESX1Q9UBX0 185 aa20.26■□□□□ 0.83
SQSTM1-216ENST00000626660 SPTBN5Q9NRC6 3674 aaKnown RBP20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 F8VP50 259 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 FOXN3O00409 490 aaPredicted RBP20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 CSH1P0DML2 217 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 CSH2P0DML3 217 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 GPR15P49685 360 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 SLC8A3P57103 927 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 BPIFB4P59827 614 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 PLCB2Q00722 1185 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 SDHAF4Q5VUM1 108 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 CACNA2D4Q7Z3S7 1137 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 LEMD2Q8NC56 503 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 PSMG2Q969U7 264 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 SPATA17Q96L03 361 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 CORO1BQ9BR76 489 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 RBSNQ9H1K0 784 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 NLRC4Q9NPP4 1024 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 ASAH2Q9NR71 780 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 CLUHO75153 1309 aa20.25■□□□□ 0.83
SQSTM1-216ENST00000626660 EPHB6O15197 1021 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 BRD2P25440 801 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 GNA15P30679 374 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 PTK2Q05397 1052 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 GOLGA7BQ2TAP0 167 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 PABPC1LQ4VXU2 614 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 CYP4A22Q5TCH4 519 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 DNAJB7Q7Z6W7 309 aaPredicted RBP20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 GAS2L3Q86XJ1 694 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 FAM71AQ8IYT1 594 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 GPR152Q8TDT2 470 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 XPO4Q9C0E2 1151 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 WDR6Q9NNW5 1121 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 HCFC1R1Q9NWW0 138 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 EHD2Q9NZN4 543 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 DNMT3BQ9UBC3 853 aaKnown RBP20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 CDH22Q9UJ99 828 aa20.24■□□□□ 0.83
SQSTM1-216ENST00000626660 SLC38A8A6NNN8 435 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 F8VZ95 297 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 O00370 1275 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 CYP26A1O43174 497 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 THAP12O43422 761 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 MED7O43513 233 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 RHOP08100 348 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 NPR3P17342 541 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 STAT1P42224 750 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 KCNQ1P51787 676 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 CACNA2D1P54289 1103 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 MAP3K7CLP57077 242 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 SMAD2Q15796 467 aaKnown RBP20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 CNGA2Q16280 664 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 PTPN21Q16825 1174 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 PDZD4Q76G19 769 aaPredicted RBP20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 ANKRD52Q8NB46 1076 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 FEZF2Q8TBJ5 459 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 TFAP2BQ92481 460 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 ASB2Q96Q27 587 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 SMOQ99835 787 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 DUSP16Q9BY84 665 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 POMKQ9H5K3 350 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 TSPAN16Q9UKR8 245 aa20.23■□□□□ 0.83
SQSTM1-216ENST00000626660 GREB1Q4ZG55 1949 aa20.22■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms