RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 DSCR3O14972 297 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 DCLK1O15075 740 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 AHSGP02765 367 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 CHRM5P08912 532 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-208ENST00000625916 DLDP09622 509 aaKnown RBP3.8□□□□□ -1.8
SCN1A-208ENST00000625916 TMEM191BP0C7N4 346 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 CYP2A6P11509 494 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-208ENST00000625916 ATP5F1P24539 256 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-208ENST00000625916 LINC00205P59089 165 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 LILRA4P59901 499 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 E2F2Q14209 437 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 IQCB1Q15051 598 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 MIDNQ504T8 468 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 L1TD1Q5T7N2 865 aaKnown RBP3.8□□□□□ -1.8
SCN1A-208ENST00000625916 KRTAP5-11Q6L8G4 156 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 KRTAP5-6Q6L8G9 129 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-208ENST00000625916 KIAA1161Q6NSJ0 714 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 GIMAP6Q6P9H5 292 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 MIER2Q8N344 545 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 C16orf52Q8NHV5 167 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 CUL5Q93034 780 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 SCAF8Q9UPN6 1271 aaKnown RBP3.8□□□□□ -1.8
SCN1A-208ENST00000625916 LRP12Q9Y561 859 aa3.8□□□□□ -1.8
SCN1A-208ENST00000625916 FCHO1O14526 889 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 SLC16A6O15403 523 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 DTNBO60941 627 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 HK3P52790 923 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 KRT85P78386 507 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 ITKQ08881 620 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 RBMS2Q15434 407 aaKnown RBP3.79□□□□□ -1.8
SCN1A-208ENST00000625916 AMOTQ4VCS5 1084 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 PPP1R3BQ86XI6 285 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 SNX18Q96RF0 628 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 DPCDQ9BVM2 203 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-208ENST00000625916 CIPCQ9C0C6 399 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 LMBRD1Q9NUN5 540 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 TFCP2L1Q9NZI6 479 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 PCDHA1Q9Y5I3 950 aa3.79□□□□□ -1.8
SCN1A-208ENST00000625916 FAM90A10PA6NDY2 464 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 FZD9O00144 591 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 ADAM10O14672 748 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 TJP3O95049 919 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 FTLP02792 175 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-208ENST00000625916 KCNJ5P48544 419 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 RENBPP51606 427 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 ALDH5A1P51649 535 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-208ENST00000625916 SATB1Q01826 763 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 GHRHRQ02643 423 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 EXOSC9Q06265 439 aaKnown RBP3.78□□□□□ -1.8
SCN1A-208ENST00000625916 MTHFD1LQ6UB35 978 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 COQ8BQ96D53 544 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 MTMR8Q96EF0 704 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 ZC3H10Q96K80 434 aaKnown RBP3.78□□□□□ -1.8
SCN1A-208ENST00000625916 MOGAT1Q96PD6 335 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 LENG8Q96PV6 779 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-208ENST00000625916 EFHD1Q9BUP0 239 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 CCDC8Q9H0W5 538 aaPredicted RBP3.78□□□□□ -1.8
SCN1A-208ENST00000625916 TMX1Q9H3N1 280 aa3.78□□□□□ -1.8
SCN1A-208ENST00000625916 NDRG4Q9ULP0 352 aaKnown RBP3.78□□□□□ -1.8
SCN1A-208ENST00000625916 TMEM232C9JQI7 657 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 GABRDO14764 452 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 UNC5CO95185 931 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 TYRP14679 529 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 CCND1P24385 295 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 PDE6CP51160 858 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 MTMR1Q13613 665 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 PTPN21Q16825 1174 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 CCDC157Q569K6 752 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 DEPDC1Q5TB30 811 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 ZNF813Q6ZN06 617 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 BRIX1Q8TDN6 353 aaKnown RBP3.77□□□□□ -1.81
SCN1A-208ENST00000625916 THAP7Q9BT49 309 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-208ENST00000625916 FOXP1Q9H334 677 aaPredicted RBP3.77□□□□□ -1.81
SCN1A-208ENST00000625916 PNPOQ9NVS9 261 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 PI4KBQ9UBF8 816 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 SHOC2Q9UQ13 582 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 ATP8A1Q9Y2Q0 1164 aa3.77□□□□□ -1.81
SCN1A-208ENST00000625916 PRR23D1E9PI22 279 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-208ENST00000625916 hCG_1984214I3L0E3 225 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 ERC2O15083 957 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 GCATO75600 419 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 OAZ2O95190 189 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 PRKCBP05771 671 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 GRPP07492 148 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 PRR23D2P0DMB1 279 aaPredicted RBP3.76□□□□□ -1.81
SCN1A-208ENST00000625916 PRF1P14222 555 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 PDCP20941 246 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 FPR3P25089 353 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 GUCY2FP51841 1108 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 ODF1Q14990 250 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 TWIST1Q15672 202 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 FAM187BQ17R55 369 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 TRIM71Q2Q1W2 868 aaKnown RBP3.76□□□□□ -1.81
SCN1A-208ENST00000625916 SLC15A3Q8IY34 581 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 SMRP1Q8NCR6 262 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 ACRBPQ8NEB7 543 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 ADAMTS18Q8TE60 1221 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 OSCP1Q8WVF1 389 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 SOCS4Q8WXH5 440 aa3.76□□□□□ -1.81
SCN1A-208ENST00000625916 VCPIP1Q96JH7 1222 aa3.76□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms