RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 CYP2B6P20813 491 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 VHLP40337 213 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 TAF6P49848 677 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 CGRRF1Q99675 332 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 CCDC134Q9H6E4 229 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 PRKAG2Q9UGJ0 569 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 IL1R1P14778 569 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 DAB2P98082 770 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 TAF1CQ15572 869 aaPredicted RBP14.56□□□□□ -0.08
CPSF1-212ENST00000616140 KIZQ2M2Z5 673 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 FAM131BQ86XD5 332 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 KIRREL3Q8IZU9 778 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 CALML6Q8TD86 181 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 AENQ8WTP8 325 aaKnown RBP14.56□□□□□ -0.08
CPSF1-212ENST00000616140 IL1RL2Q9HB29 575 aa14.56□□□□□ -0.08
CPSF1-212ENST00000616140 DDX4Q9NQI0 724 aaKnown RBP14.56□□□□□ -0.08
CPSF1-212ENST00000616140 TMEM150BA6NC51 233 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 EML1O00423 815 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 RPL21P46778 160 aaKnown RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 CLEC16AQ2KHT3 1053 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 SPDYAQ5MJ70 313 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 IL31Q6EBC2 164 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 OTOP1Q7RTM1 612 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 FAM172AQ8WUF8 416 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 CNPY3Q9BT09 278 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 ZNF518BQ9C0D4 1074 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 DDX20Q9UHI6 824 aaKnown RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 SIK3Q9Y2K2 1263 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 USP20Q9Y2K6 914 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 PJA2O43164 708 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 TPST1O60507 370 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 TADA2AO75478 443 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 CSDE1O75534 798 aaKnown RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 RARAP10276 462 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 VDRP11473 427 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 BACE1P56817 501 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 LAMC2Q13753 1193 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 DENND5BQ6ZUT9 1274 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 ABRAQ8N0Z2 381 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 ZNF606Q8WXB4 792 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 NAF1Q96HR8 494 aaKnown RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 ILKAPQ9H0C8 392 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 LRRC4BQ9NT99 713 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 NWD1Q149M9 1564 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 DEPDC5O75140 1603 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 SYNDIG1LA6NDD5 238 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 SUPT3HO75486 399 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 NUDT2P50583 147 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 IFI35P80217 286 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 SNAPC2Q13487 334 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 FLOT2Q14254 428 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 MPZL3Q6UWV2 235 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 MTDHQ86UE4 582 aaKnown RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 MCOLN2Q8IZK6 566 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 ZNF512Q96ME7 567 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 SLC38A7Q9NVC3 462 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 UBQLN1Q9UMX0 589 aaKnown RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 RIPK2O43353 540 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 MYO1DO94832 1006 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 PCNX4Q63HM2 1172 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 FOXR1Q6PIV2 292 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 SETD3Q86TU7 594 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-212ENST00000616140 ARHGEF19Q8IW93 802 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 CLEC4FQ8N1N0 589 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 NSMCE4AQ9NXX6 385 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 PKD2L2Q9NZM6 624 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 USP18Q9UMW8 372 aa14.55□□□□□ -0.08
CPSF1-212ENST00000616140 AGLP35573 1532 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 MAP2K7O14733 419 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 VCAM1P19320 739 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 PTPN11Q06124 597 aaPredicted RBP14.54□□□□□ -0.08
CPSF1-212ENST00000616140 DENND1BQ6P3S1 775 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 SLC26A11Q86WA9 606 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 SPIRE2Q8WWL2 714 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 RXFP2Q8WXD0 754 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 APOL2Q9BQE5 337 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 EIF2AQ9BY44 585 aaKnown RBP14.54□□□□□ -0.08
CPSF1-212ENST00000616140 MAP3K20Q9NYL2 800 aaKnown RBP14.54□□□□□ -0.08
CPSF1-212ENST00000616140 ARHGAP26Q9UNA1 814 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 ZC3H4Q9UPT8 1303 aaKnown RBP14.54□□□□□ -0.08
CPSF1-212ENST00000616140 PDE4DIPQ5VU43 2346 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 EPHB6O15197 1021 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 SKAP2O75563 359 aaPredicted RBP14.54□□□□□ -0.08
CPSF1-212ENST00000616140 BTKQ06187 659 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 CATSPERBQ9H7T0 1116 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 AGO4Q9HCK5 861 aaKnown RBP14.54□□□□□ -0.08
CPSF1-212ENST00000616140 GLRA3O75311 464 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 ATP6V1B1P15313 513 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 TWF1Q12792 350 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 CBWD6Q4V339 395 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 CBWD3Q5JTY5 395 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 CBWD5Q5RIA9 395 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 NAT9Q9BTE0 207 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 SLC24A2Q9UI40 661 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 KIAA1257Q9ULG3 409 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 PCDHGC5Q9Y5F6 944 aa14.54□□□□□ -0.08
CPSF1-212ENST00000616140 SDR42E2A6NKP2 422 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 O00370 1275 aa14.53□□□□□ -0.08
CPSF1-212ENST00000616140 B3GAT3O94766 335 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms