RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 DMWDQ09019 674 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 TWF1Q12792 350 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 FZD5Q13467 585 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 GRM2Q14416 872 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 NR1I3Q14994 352 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 MAN2A1Q16706 1144 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 CCDC40Q4G0X9 1142 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 VWA3BQ502W6 1294 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 KRT39Q6A163 491 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 GPIHBP1Q8IV16 184 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 FAM114A1Q8IWE2 563 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 RNF214Q8ND24 703 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 BEST2Q8NFU1 509 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 CACTINQ8WUQ7 758 aaKnown RBP9.37□□□□□ -0.91
TRIM28-214ENST00000600840 NELL1Q92832 810 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 FNBP1Q96RU3 617 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 DDX23Q9BUQ8 820 aaKnown RBP9.37□□□□□ -0.91
TRIM28-214ENST00000600840 LRRC3Q9BY71 257 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 RTN4Q9NQC3 1192 aaKnown RBP9.37□□□□□ -0.91
TRIM28-214ENST00000600840 AVENQ9NQS1 362 aaPredicted RBP9.37□□□□□ -0.91
TRIM28-214ENST00000600840 AFF4Q9UHB7 1163 aaKnown RBP9.37□□□□□ -0.91
TRIM28-214ENST00000600840 GMEB2Q9UKD1 530 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 ITGA11Q9UKX5 1188 aa9.37□□□□□ -0.91
TRIM28-214ENST00000600840 UTP18Q9Y5J1 556 aaKnown RBP eCLIP9.37□□□□□ -0.911e-7■□□□□ 10.5
TRIM28-214ENST00000600840 A0A1B0GTH6 734 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 FAM170BA6NMN3 283 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 TEX33O43247 280 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 OAZ2O95190 189 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 ASS1P00966 412 aaKnown RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 AFPP02771 609 aaKnown RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 ITGB3P05106 788 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 LILRA4P59901 499 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 MYL6P60660 151 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 FANCCQ00597 558 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 YWHAHQ04917 246 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 DUSP4Q13115 394 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 MLF2Q15773 248 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 TPD52L1Q16890 204 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 FAM78AQ5JUQ0 283 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 STXBP5Q5T5C0 1151 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 TPGS2Q68CL5 300 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 ZNF280DQ6N043 979 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 MTSS1LQ765P7 747 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 RTL10Q7L3V2 364 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 LRRC52Q8N7C0 313 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 ATAD1Q8NBU5 361 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 EHBP1Q8NDI1 1231 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 OR10T2Q8NGX3 314 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 NETO1Q8TDF5 533 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 RSPRY1Q96DX4 576 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 SENP8Q96LD8 212 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 APOBEC3GQ9HC16 384 aaKnown RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 ZNF334Q9HCZ1 680 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 LTB4R2Q9NPC1 389 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 SIX2Q9NPC8 291 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 HEBP1Q9NRV9 189 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 GDAP2Q9NXN4 497 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 TAB2Q9NYJ8 693 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 ANGPTL2Q9UKU9 493 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 AGAP1Q9UPQ3 857 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 SLC27A5Q9Y2P5 690 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 YIPF1Q9Y548 306 aa9.36□□□□□ -0.91
TRIM28-214ENST00000600840 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.36□□□□□ -0.91
TRIM28-214ENST00000600840 GTPBP10A4D1E9 387 aaKnown RBP9.35□□□□□ -0.91
TRIM28-214ENST00000600840 MTMR11A4FU01 709 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 LGALS16A8MUM7 142 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 BECN2A8MW95 431 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 XPOTO43592 962 aaKnown RBP9.35□□□□□ -0.91
TRIM28-214ENST00000600840 STX10O60499 249 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 ECI2O75521 394 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 HLA-DRAP01903 254 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 TNNC2P02585 160 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 TMEM191BP0C7N4 346 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 MYL4P12829 197 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 CPB1P15086 417 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 SLC9A1P19634 815 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 TARSP26639 723 aaKnown RBP9.35□□□□□ -0.91
TRIM28-214ENST00000600840 PMLP29590 882 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 POLR2BP30876 1174 aaKnown RBP9.35□□□□□ -0.91
TRIM28-214ENST00000600840 ATICP31939 592 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 VIPR2P41587 438 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 MTIF2P46199 727 aaKnown RBP9.35□□□□□ -0.91
TRIM28-214ENST00000600840 MXI1P50539 228 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 EPHA5P54756 1037 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 RBP5P82980 135 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 CCDC173Q0VFZ6 552 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 NCOA4Q13772 614 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 TEAD2Q15562 447 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 DCAF17Q5H9S7 520 aaPredicted RBP9.35□□□□□ -0.91
TRIM28-214ENST00000600840 N4BP2L1Q5TBK1 243 aaPredicted RBP9.35□□□□□ -0.91
TRIM28-214ENST00000600840 TCERG1LQ5VWI1 586 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 SARM1Q6SZW1 724 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 VITQ6UXI7 678 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 DSTYKQ6XUX3 929 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 TMC8Q8IU68 726 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 UBR7Q8N806 425 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 FBXL13Q8NEE6 735 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 APPL2Q8NEU8 664 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 SHKBP1Q8TBC3 707 aa9.35□□□□□ -0.91
TRIM28-214ENST00000600840 TATDN2Q93075 761 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms